Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.87■□□□□ 0.45
HMGCS2P54868 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
HMGCS2P54868 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
HMGCS2P54868 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
HMGCS2P54868 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.87■□□□□ 0.45
HMGCS2P54868 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 SNX21-203ENST00000372541 771 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC17.86■□□□□ 0.45
HMGCS2P54868 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGCS2P54868 HLA-DPB2-205ENST00000435074 1188 ntBASIC17.86■□□□□ 0.45
HMGCS2P54868 HSPB1P2-201ENST00000448722 546 ntBASIC17.86■□□□□ 0.45
HMGCS2P54868 AC005077.2-201ENST00000449786 690 ntBASIC17.86■□□□□ 0.45
HMGCS2P54868 APOA2-204ENST00000464492 530 ntTSL 3 BASIC17.86■□□□□ 0.45
HMGCS2P54868 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 HIST2H2BC-201ENST00000498492 580 ntBASIC17.86■□□□□ 0.45
HMGCS2P54868 AC004066.1-201ENST00000502488 802 ntBASIC17.86■□□□□ 0.45
HMGCS2P54868 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 RNA5SP423-201ENST00000517127 109 ntBASIC17.86■□□□□ 0.45
HMGCS2P54868 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGCS2P54868 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 AC020914.3-201ENST00000594712 304 ntBASIC17.86■□□□□ 0.45
HMGCS2P54868 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
HMGCS2P54868 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC17.86■□□□□ 0.45
HMGCS2P54868 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
HMGCS2P54868 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HMGCS2P54868 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
HMGCS2P54868 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC17.86■□□□□ 0.45
HMGCS2P54868 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
HMGCS2P54868 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
HMGCS2P54868 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
HMGCS2P54868 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HMGCS2P54868 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
HMGCS2P54868 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
HMGCS2P54868 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
HMGCS2P54868 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGCS2P54868 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC17.85■□□□□ 0.45
HMGCS2P54868 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGCS2P54868 PTPA-218ENST00000435132 618 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGCS2P54868 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGCS2P54868 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGCS2P54868 BX284668.4-201ENST00000453917 508 ntBASIC17.85■□□□□ 0.45
HMGCS2P54868 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC17.85■□□□□ 0.45
HMGCS2P54868 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGCS2P54868 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC17.85■□□□□ 0.45
HMGCS2P54868 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC17.85■□□□□ 0.45
HMGCS2P54868 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
HMGCS2P54868 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HMGCS2P54868 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGCS2P54868 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGCS2P54868 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGCS2P54868 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGCS2P54868 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC17.84■□□□□ 0.45
HMGCS2P54868 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
HMGCS2P54868 KRT8P14-201ENST00000414254 1442 ntBASIC17.84■□□□□ 0.45
HMGCS2P54868 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC17.84■□□□□ 0.45
HMGCS2P54868 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGCS2P54868 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
HMGCS2P54868 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC17.84■□□□□ 0.45
HMGCS2P54868 TISP43-201ENST00000409793 538 ntTSL 4 BASIC17.84■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms