Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AMT-204ENST00000427987 1646 ntTSL 5 BASIC13.09□□□□□ -0.31
HOXA1P49639 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC13.09□□□□□ -0.31
HOXA1P49639 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC13.09□□□□□ -0.31
HOXA1P49639 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 SLC1A7-202ENST00000371494 2637 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
HOXA1P49639 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.08□□□□□ -0.31
HOXA1P49639 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.31
HOXA1P49639 ANK1-205ENST00000347528 8237 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.31
HOXA1P49639 AFAP1L1-205ENST00000515000 2319 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
HOXA1P49639 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC13.08□□□□□ -0.31
HOXA1P49639 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
HOXA1P49639 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
HOXA1P49639 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC13.08□□□□□ -0.31
HOXA1P49639 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.31
HOXA1P49639 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
HOXA1P49639 CFAP46-202ENST00000368586 8278 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
HOXA1P49639 IL3RA-201ENST00000331035 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 KIAA0141-201ENST00000194118 2203 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
HOXA1P49639 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC13.08□□□□□ -0.32
HOXA1P49639 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.08□□□□□ -0.32
HOXA1P49639 RERE-204ENST00000400908 5790 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
HOXA1P49639 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 AC073621.1-201ENST00000392730 636 ntBASIC13.08□□□□□ -0.32
HOXA1P49639 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC13.08□□□□□ -0.32
HOXA1P49639 DUSP5P1-201ENST00000441325 1139 ntBASIC13.08□□□□□ -0.32
HOXA1P49639 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.08□□□□□ -0.32
HOXA1P49639 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
HOXA1P49639 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.08□□□□□ -0.32
HOXA1P49639 IGHV3-65-201ENST00000523210 341 ntBASIC13.08□□□□□ -0.32
HOXA1P49639 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC13.08□□□□□ -0.32
HOXA1P49639 RIN3-211ENST00000557762 517 ntTSL 3 BASIC13.08□□□□□ -0.32
HOXA1P49639 CD22-209ENST00000594250 2107 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC13.08□□□□□ -0.32
HOXA1P49639 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
HOXA1P49639 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
HOXA1P49639 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC13.08□□□□□ -0.32
HOXA1P49639 RARG-202ENST00000394426 2640 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
HOXA1P49639 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.08□□□□□ -0.32
HOXA1P49639 AC013726.1-201ENST00000563747 2285 ntBASIC13.08□□□□□ -0.32
HOXA1P49639 RHOH-224ENST00000622175 2254 ntAPPRIS P1 TSL 4 BASIC13.08□□□□□ -0.32
HOXA1P49639 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 KIRREL3-205ENST00000529097 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 CTCFL-205ENST00000423479 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC13.07□□□□□ -0.32
HOXA1P49639 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC13.07□□□□□ -0.32
HOXA1P49639 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
HOXA1P49639 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC13.07□□□□□ -0.32
HOXA1P49639 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
HOXA1P49639 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC13.07□□□□□ -0.32
HOXA1P49639 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC13.07□□□□□ -0.32
HOXA1P49639 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
HOXA1P49639 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC13.07□□□□□ -0.32
HOXA1P49639 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 RPS29-206ENST00000557111 488 ntTSL 2 BASIC13.07□□□□□ -0.32
HOXA1P49639 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC13.07□□□□□ -0.32
HOXA1P49639 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 MIR4515-201ENST00000584082 81 ntBASIC13.07□□□□□ -0.32
HOXA1P49639 AL356488.2-201ENST00000602755 427 ntBASIC13.07□□□□□ -0.32
HOXA1P49639 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC13.07□□□□□ -0.32
HOXA1P49639 AL035685.1-202ENST00000637341 1688 ntTSL 5 BASIC13.07□□□□□ -0.32
HOXA1P49639 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
HOXA1P49639 ANO7-202ENST00000402430 2652 ntAPPRIS ALT2 TSL 5 BASIC13.07□□□□□ -0.32
HOXA1P49639 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 PAX2-202ENST00000361791 3193 ntAPPRIS ALT1 TSL 2 BASIC13.07□□□□□ -0.32
HOXA1P49639 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
HOXA1P49639 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC13.07□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms