Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PKIG-203ENST00000372887 769 ntTSL 3 BASIC18.43■□□□□ 0.54
HMGB1P09429 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
HMGB1P09429 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGB1P09429 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGB1P09429 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.43■□□□□ 0.54
HMGB1P09429 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC18.43■□□□□ 0.54
HMGB1P09429 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.43■□□□□ 0.54
HMGB1P09429 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC18.43■□□□□ 0.54
HMGB1P09429 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGB1P09429 AC000095.1-201ENST00000603208 874 ntBASIC18.43■□□□□ 0.54
HMGB1P09429 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC18.43■□□□□ 0.54
HMGB1P09429 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.43■□□□□ 0.54
HMGB1P09429 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
HMGB1P09429 TSPY26P-202ENST00000565928 3884 ntBASIC18.43■□□□□ 0.54
HMGB1P09429 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 AC022144.1-201ENST00000602255 1580 ntBASIC18.42■□□□□ 0.54
HMGB1P09429 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.42■□□□□ 0.54
HMGB1P09429 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGB1P09429 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGB1P09429 AC068587.6-202ENST00000641839 5619 ntBASIC18.42■□□□□ 0.54
HMGB1P09429 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
HMGB1P09429 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGB1P09429 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGB1P09429 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC18.42■□□□□ 0.54
HMGB1P09429 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 ZBP1-201ENST00000371173 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 MROH4P-201ENST00000431302 1578 ntBASIC18.42■□□□□ 0.54
HMGB1P09429 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC18.42■□□□□ 0.54
HMGB1P09429 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
HMGB1P09429 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
HMGB1P09429 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HMGB1P09429 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGB1P09429 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HMGB1P09429 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGB1P09429 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HMGB1P09429 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.41■□□□□ 0.54
HMGB1P09429 GHSR-202ENST00000427970 912 ntBASIC18.41■□□□□ 0.54
HMGB1P09429 BASP1P1-201ENST00000430708 665 ntBASIC18.41■□□□□ 0.54
HMGB1P09429 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGB1P09429 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGB1P09429 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.41■□□□□ 0.54
HMGB1P09429 MEIS3P1-201ENST00000495167 958 ntBASIC18.41■□□□□ 0.54
HMGB1P09429 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC18.41■□□□□ 0.54
HMGB1P09429 RFPL4AP1-201ENST00000530883 850 ntBASIC18.41■□□□□ 0.54
HMGB1P09429 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGB1P09429 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC18.41■□□□□ 0.54
HMGB1P09429 AC106028.4-201ENST00000614509 607 ntBASIC18.41■□□□□ 0.54
HMGB1P09429 ORC5-208ENST00000626700 344 ntTSL 3 BASIC18.41■□□□□ 0.54
HMGB1P09429 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
HMGB1P09429 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.41■□□□□ 0.54
HMGB1P09429 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGB1P09429 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC18.41■□□□□ 0.54
HMGB1P09429 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
HMGB1P09429 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 TP73-209ENST00000603362 1668 ntTSL 5 BASIC18.41■□□□□ 0.54
HMGB1P09429 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
HMGB1P09429 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
HMGB1P09429 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms