Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC20.28■□□□□ 0.84
COL3A1P02461 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC20.28■□□□□ 0.84
COL3A1P02461 RNA5SP486-201ENST00000515961 83 ntBASIC20.28■□□□□ 0.84
COL3A1P02461 RNA5SP412-201ENST00000516234 123 ntBASIC20.28■□□□□ 0.84
COL3A1P02461 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
COL3A1P02461 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
COL3A1P02461 ABR-203ENST00000536794 2213 ntTSL 2 BASIC20.28■□□□□ 0.84
COL3A1P02461 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC20.28■□□□□ 0.84
COL3A1P02461 AL583810.1-201ENST00000553344 1045 ntBASIC20.28■□□□□ 0.84
COL3A1P02461 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL3A1P02461 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
COL3A1P02461 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL3A1P02461 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL3A1P02461 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC20.27■□□□□ 0.84
COL3A1P02461 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL3A1P02461 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL3A1P02461 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL3A1P02461 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL3A1P02461 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC20.27■□□□□ 0.84
COL3A1P02461 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC20.27■□□□□ 0.84
COL3A1P02461 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL3A1P02461 AHRR-211ENST00000515206 462 ntTSL 5 BASIC20.27■□□□□ 0.84
COL3A1P02461 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC20.27■□□□□ 0.84
COL3A1P02461 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC20.27■□□□□ 0.84
COL3A1P02461 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL3A1P02461 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC20.27■□□□□ 0.84
COL3A1P02461 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC20.27■□□□□ 0.84
COL3A1P02461 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL3A1P02461 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL3A1P02461 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC20.27■□□□□ 0.84
COL3A1P02461 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
COL3A1P02461 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC20.27■□□□□ 0.84
COL3A1P02461 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC20.27■□□□□ 0.83
COL3A1P02461 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL3A1P02461 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL3A1P02461 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.83
COL3A1P02461 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL3A1P02461 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL3A1P02461 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL3A1P02461 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.83
COL3A1P02461 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
COL3A1P02461 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
COL3A1P02461 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC20.26■□□□□ 0.83
COL3A1P02461 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC20.26■□□□□ 0.83
COL3A1P02461 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 LILRP1-201ENST00000444199 1370 ntBASIC20.26■□□□□ 0.83
COL3A1P02461 PCDHGB8P-201ENST00000502926 1973 ntBASIC20.26■□□□□ 0.83
COL3A1P02461 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC20.26■□□□□ 0.83
COL3A1P02461 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC20.26■□□□□ 0.83
COL3A1P02461 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC20.26■□□□□ 0.83
COL3A1P02461 AL160412.1-202ENST00000616819 663 ntTSL 4 BASIC20.26■□□□□ 0.83
COL3A1P02461 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 AL137783.1-201ENST00000623494 1896 ntBASIC20.26■□□□□ 0.83
COL3A1P02461 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL3A1P02461 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC20.26■□□□□ 0.83
COL3A1P02461 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC20.26■□□□□ 0.83
COL3A1P02461 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC20.26■□□□□ 0.83
COL3A1P02461 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL3A1P02461 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL3A1P02461 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL3A1P02461 AC092384.3-202ENST00000564646 2873 ntBASIC20.26■□□□□ 0.83
COL3A1P02461 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC20.26■□□□□ 0.83
COL3A1P02461 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
COL3A1P02461 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC20.25■□□□□ 0.83
COL3A1P02461 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC20.25■□□□□ 0.83
COL3A1P02461 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
COL3A1P02461 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC20.25■□□□□ 0.83
COL3A1P02461 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC20.25■□□□□ 0.83
COL3A1P02461 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC20.25■□□□□ 0.83
COL3A1P02461 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
COL3A1P02461 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
COL3A1P02461 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.25■□□□□ 0.83
COL3A1P02461 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
COL3A1P02461 AC132938.4-201ENST00000623835 848 ntBASIC20.25■□□□□ 0.83
COL3A1P02461 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC20.25■□□□□ 0.83
COL3A1P02461 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
COL3A1P02461 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL3A1P02461 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms