Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.26■□□□□ 0.03
HDAC3O15379 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC15.26■□□□□ 0.03
HDAC3O15379 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HDAC3O15379 AL607033.1-201ENST00000623900 1599 ntBASIC15.26■□□□□ 0.03
HDAC3O15379 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
HDAC3O15379 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
HDAC3O15379 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 LINGO1-204ENST00000561030 2677 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.26■□□□□ 0.03
HDAC3O15379 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.26■□□□□ 0.03
HDAC3O15379 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
HDAC3O15379 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 PCDHGB8P-201ENST00000502926 1973 ntBASIC15.25■□□□□ 0.03
HDAC3O15379 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 AC084364.1-201ENST00000551967 1556 ntBASIC15.25■□□□□ 0.03
HDAC3O15379 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 CCHCR1-208ENST00000451521 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 CICP11-201ENST00000434745 2827 ntBASIC15.25■□□□□ 0.03
HDAC3O15379 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC15.25■□□□□ 0.03
HDAC3O15379 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC15.25■□□□□ 0.03
HDAC3O15379 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 HLA-H-201ENST00000383620 1096 ntBASIC15.25■□□□□ 0.03
HDAC3O15379 MRPL3P1-201ENST00000400109 1033 ntBASIC15.25■□□□□ 0.03
HDAC3O15379 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.25■□□□□ 0.03
HDAC3O15379 AL135744.1-201ENST00000565098 629 ntBASIC15.25■□□□□ 0.03
HDAC3O15379 INO80E-210ENST00000567705 880 ntTSL 3 BASIC15.25■□□□□ 0.03
HDAC3O15379 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC15.25■□□□□ 0.03
HDAC3O15379 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC15.25■□□□□ 0.03
HDAC3O15379 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC15.25■□□□□ 0.03
HDAC3O15379 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
HDAC3O15379 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
HDAC3O15379 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
HDAC3O15379 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.25■□□□□ 0.03
HDAC3O15379 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.25■□□□□ 0.03
HDAC3O15379 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HDAC3O15379 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.24■□□□□ 0.03
HDAC3O15379 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 SYBU-207ENST00000433638 3104 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HDAC3O15379 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HDAC3O15379 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.24■□□□□ 0.03
HDAC3O15379 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HDAC3O15379 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.24■□□□□ 0.03
HDAC3O15379 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.24■□□□□ 0.03
HDAC3O15379 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.24■□□□□ 0.03
HDAC3O15379 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.24■□□□□ 0.03
HDAC3O15379 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HDAC3O15379 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.24■□□□□ 0.03
HDAC3O15379 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC15.24■□□□□ 0.03
HDAC3O15379 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC15.24■□□□□ 0.03
HDAC3O15379 AC034105.1-201ENST00000563488 319 ntBASIC15.24■□□□□ 0.03
HDAC3O15379 AC145285.3-201ENST00000564603 959 ntBASIC15.24■□□□□ 0.03
HDAC3O15379 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms