Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 RBM17P3-201ENST00000417687 1192 ntBASIC11.5□□□□□ -0.57
SMKR1H3BMG3 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 KRT16P4-201ENST00000453883 522 ntBASIC11.5□□□□□ -0.57
SMKR1H3BMG3 FAM86EP-206ENST00000510506 987 ntBASIC11.5□□□□□ -0.57
SMKR1H3BMG3 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 LTBR-211ENST00000543190 785 ntTSL 3 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 PPOX-219ENST00000544598 813 ntTSL 2 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 MIR4313-201ENST00000580760 101 ntBASIC11.5□□□□□ -0.57
SMKR1H3BMG3 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 IGHV3OR16-7-201ENST00000604106 360 ntBASIC11.5□□□□□ -0.57
SMKR1H3BMG3 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 TFCP2-201ENST00000257915 3546 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 BX640514.1-201ENST00000583223 1918 ntBASIC11.5□□□□□ -0.57
SMKR1H3BMG3 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 LLGL1-201ENST00000316843 4260 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 DENND1B-211ENST00000620048 8378 ntAPPRIS ALT2 TSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 CLEC16A-202ENST00000409552 3365 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 HBP1-201ENST00000222574 2829 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 OSBPL8-201ENST00000261183 7239 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 OSBPL8-218ENST00000611266 7239 ntAPPRIS ALT1 TSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
SMKR1H3BMG3 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 PTBP1-221ENST00000635647 3691 ntTSL 5 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 AC097359.2-201ENST00000604992 2389 ntBASIC11.49□□□□□ -0.57
SMKR1H3BMG3 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 TBC1D1-214ENST00000508802 4119 ntTSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 NME2-201ENST00000393183 568 ntTSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 DUSP5P1-201ENST00000441325 1139 ntBASIC11.49□□□□□ -0.57
SMKR1H3BMG3 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 MIR4321-201ENST00000592276 80 ntBASIC11.49□□□□□ -0.57
SMKR1H3BMG3 AC116407.4-201ENST00000623319 1061 ntBASIC11.49□□□□□ -0.57
SMKR1H3BMG3 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 RIC8B-202ENST00000392837 5135 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 AL928921.2-201ENST00000641325 2442 ntBASIC11.49□□□□□ -0.57
SMKR1H3BMG3 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 BAIAP2-220ENST00000575712 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
SMKR1H3BMG3 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms