Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.47■□□□□ 0.23
CDH9Q9ULB4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 TMEM14DP-201ENST00000422205 345 ntBASIC16.46■□□□□ 0.23
CDH9Q9ULB4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 AP001063.1-201ENST00000568332 529 ntBASIC16.46■□□□□ 0.23
CDH9Q9ULB4 AC009486.1-201ENST00000569860 813 ntBASIC16.46■□□□□ 0.23
CDH9Q9ULB4 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 AC008735.3-201ENST00000596646 500 ntBASIC16.46■□□□□ 0.23
CDH9Q9ULB4 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 AL162274.1-201ENST00000617191 1098 ntBASIC16.46■□□□□ 0.23
CDH9Q9ULB4 AC005252.2-201ENST00000624630 1141 ntBASIC16.46■□□□□ 0.23
CDH9Q9ULB4 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.46■□□□□ 0.23
CDH9Q9ULB4 AL138799.1-201ENST00000448213 1675 ntBASIC16.46■□□□□ 0.23
CDH9Q9ULB4 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CDH9Q9ULB4 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.22
CDH9Q9ULB4 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDH9Q9ULB4 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
CDH9Q9ULB4 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.22
CDH9Q9ULB4 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 TDH-203ENST00000531764 1110 ntBASIC16.45■□□□□ 0.22
CDH9Q9ULB4 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 APOC4-201ENST00000591600 348 ntTSL 3 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 AL645728.2-202ENST00000641679 227 ntBASIC16.45■□□□□ 0.22
CDH9Q9ULB4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 AC009090.5-201ENST00000624886 2285 ntBASIC16.45■□□□□ 0.22
CDH9Q9ULB4 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CDH9Q9ULB4 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.44■□□□□ 0.22
CDH9Q9ULB4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms