Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 GLIDR-202ENST00000625350 2588 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
UPF3BQ9BZI7 AC148477.4-201ENST00000613430 1793 ntBASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 TARDBPP1-201ENST00000442013 1203 ntBASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 METTL23-205ENST00000588302 925 ntTSL 5 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 AL096865.1-201ENST00000606796 927 ntBASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
UPF3BQ9BZI7 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 AC126365.1-201ENST00000578585 1514 ntBASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 KRT8P12-202ENST00000472924 1397 ntBASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 RPS19-201ENST00000221975 500 ntTSL 3 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 CICP11-201ENST00000434745 2827 ntBASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
UPF3BQ9BZI7 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPF3BQ9BZI7 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPF3BQ9BZI7 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
UPF3BQ9BZI7 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms