Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 HIST3H2BA-201ENST00000436555 524 ntBASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 AL671883.3-201ENST00000603274 991 ntBASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
ATG4AQ8WYN0 NFIC-211ENST00000641145 8399 ntBASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 SLC35A2-204ENST00000376521 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 KRT18P32-201ENST00000424695 1287 ntBASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 AL353705.2-201ENST00000428243 662 ntBASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 FGD5P1-202ENST00000614866 2498 ntBASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
ATG4AQ8WYN0 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 GPSM1-202ENST00000354753 3533 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 MAP7D1-204ENST00000373151 3324 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 AC018529.1-201ENST00000613063 361 ntBASIC16.24■□□□□ 0.19
ATG4AQ8WYN0 AL513210.1-201ENST00000629608 234 ntBASIC16.24■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms