Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 PTDSS1-202ENST00000517309 5177 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 TEX13B-201ENST00000302917 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 ABBA01031663.1-201ENST00000635630 790 ntBASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC16.71■□□□□ 0.27
CTC1Q2NKJ3 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
CTC1Q2NKJ3 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 CPEB3-203ENST00000614585 5789 ntAPPRIS P3 TSL 5 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 OARD1-212ENST00000482515 832 ntTSL 2 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 KRT8P37-201ENST00000451609 1420 ntBASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
CTC1Q2NKJ3 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 ARTN-209ENST00000479128 471 ntTSL 3 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 AC023310.1-201ENST00000554836 735 ntBASIC16.69■□□□□ 0.26
CTC1Q2NKJ3 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.69■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms