Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
CKS1BP61024 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC11.09□□□□□ -0.63
CKS1BP61024 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC11.09□□□□□ -0.63
CKS1BP61024 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 USP19-206ENST00000417901 4706 ntAPPRIS ALT2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC11.09□□□□□ -0.63
CKS1BP61024 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
CKS1BP61024 NUS1P2-201ENST00000417358 873 ntBASIC11.09□□□□□ -0.63
CKS1BP61024 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 WDR53-204ENST00000433160 887 ntTSL 5 BASIC11.09□□□□□ -0.63
CKS1BP61024 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC11.09□□□□□ -0.63
CKS1BP61024 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC11.09□□□□□ -0.63
CKS1BP61024 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 DBP-204ENST00000599385 709 ntTSL 3 BASIC11.09□□□□□ -0.63
CKS1BP61024 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 AC099336.1-202ENST00000602961 463 ntBASIC11.09□□□□□ -0.63
CKS1BP61024 AL591684.3-201ENST00000605187 298 ntBASIC11.09□□□□□ -0.63
CKS1BP61024 AL353135.1-201ENST00000606729 504 ntBASIC11.09□□□□□ -0.63
CKS1BP61024 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC11.09□□□□□ -0.63
CKS1BP61024 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 ESS2-201ENST00000252137 5392 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 CACNA1C-231ENST00000616390 2833 ntTSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 LMBRD2-201ENST00000296603 8185 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 GSN-215ENST00000545652 2428 ntTSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 MED22-209ENST00000610888 3867 ntAPPRIS ALT1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 MROH2A-208ENST00000610772 5324 ntAPPRIS P2 TSL 5 BASIC11.09□□□□□ -0.63
CKS1BP61024 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC11.09□□□□□ -0.63
CKS1BP61024 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC11.09□□□□□ -0.63
CKS1BP61024 MEX3B-202ENST00000558133 4333 ntBASIC11.09□□□□□ -0.63
CKS1BP61024 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 SELENON-201ENST00000354177 4227 ntAPPRIS ALT2 TSL 5 BASIC11.09□□□□□ -0.63
CKS1BP61024 AC131212.3-201ENST00000624087 4219 ntBASIC11.09□□□□□ -0.63
CKS1BP61024 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 RNF26-201ENST00000311413 2787 ntAPPRIS P1 BASIC11.09□□□□□ -0.63
CKS1BP61024 SLFNL1-204ENST00000372613 2654 ntTSL 2 BASIC11.09□□□□□ -0.63
CKS1BP61024 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 MSH2-201ENST00000233146 3307 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC11.09□□□□□ -0.63
CKS1BP61024 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC11.08□□□□□ -0.63
CKS1BP61024 AL031731.1-201ENST00000642131 2094 ntBASIC11.08□□□□□ -0.63
CKS1BP61024 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC11.08□□□□□ -0.63
CKS1BP61024 TKT-203ENST00000423525 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.63
CKS1BP61024 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 GTF2IRD1P1-202ENST00000457166 2426 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 AL118506.1-201ENST00000601296 3082 ntBASIC11.08□□□□□ -0.64
CKS1BP61024 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC11.08□□□□□ -0.64
CKS1BP61024 PPP1R3D-201ENST00000370996 3630 ntAPPRIS P1 BASIC11.08□□□□□ -0.64
CKS1BP61024 CMIP-208ENST00000566462 3512 ntTSL 4 BASIC11.08□□□□□ -0.64
CKS1BP61024 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 CDK11A-201ENST00000356200 2653 ntTSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 RBL1-201ENST00000344359 3225 ntTSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 SLC4A7-214ENST00000455077 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 AMT-221ENST00000538581 2038 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 FLT4-201ENST00000261937 5857 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC11.08□□□□□ -0.64
CKS1BP61024 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC11.08□□□□□ -0.64
CKS1BP61024 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 RBSN-204ENST00000449050 903 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC11.08□□□□□ -0.64
CKS1BP61024 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC11.08□□□□□ -0.64
CKS1BP61024 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC11.08□□□□□ -0.64
CKS1BP61024 AC012615.1-201ENST00000565797 1299 ntBASIC11.08□□□□□ -0.64
CKS1BP61024 MIR5100-201ENST00000579544 119 ntBASIC11.08□□□□□ -0.64
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms