Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 MED29-204ENST00000599213 2490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC16.18■□□□□ 0.18
NEK3P51956 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.18■□□□□ 0.18
NEK3P51956 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC16.18■□□□□ 0.18
NEK3P51956 AC190387.1-201ENST00000551683 408 ntBASIC16.18■□□□□ 0.18
NEK3P51956 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
NEK3P51956 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
NEK3P51956 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 MIR6069-201ENST00000620069 79 ntBASIC16.18■□□□□ 0.18
NEK3P51956 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
NEK3P51956 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.18■□□□□ 0.18
NEK3P51956 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.18■□□□□ 0.18
NEK3P51956 AC087481.3-201ENST00000602886 1894 ntBASIC16.18■□□□□ 0.18
NEK3P51956 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC16.18■□□□□ 0.18
NEK3P51956 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
NEK3P51956 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
NEK3P51956 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC16.18■□□□□ 0.18
NEK3P51956 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.18■□□□□ 0.18
NEK3P51956 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 JPH4-205ENST00000622501 3489 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
NEK3P51956 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 BTBD7P1-201ENST00000447253 1453 ntBASIC16.17■□□□□ 0.18
NEK3P51956 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 AL136982.4-201ENST00000437689 1740 ntBASIC16.17■□□□□ 0.18
NEK3P51956 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
NEK3P51956 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC16.17■□□□□ 0.18
NEK3P51956 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.17■□□□□ 0.18
NEK3P51956 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
NEK3P51956 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC16.17■□□□□ 0.18
NEK3P51956 GOLGA6L11P-201ENST00000417252 1298 ntBASIC16.17■□□□□ 0.18
NEK3P51956 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.17■□□□□ 0.18
NEK3P51956 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC16.17■□□□□ 0.18
NEK3P51956 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.17■□□□□ 0.18
NEK3P51956 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC16.17■□□□□ 0.18
NEK3P51956 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.17■□□□□ 0.18
NEK3P51956 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
NEK3P51956 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC16.17■□□□□ 0.18
NEK3P51956 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC16.17■□□□□ 0.18
NEK3P51956 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC16.17■□□□□ 0.18
NEK3P51956 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
NEK3P51956 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.17■□□□□ 0.18
NEK3P51956 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
NEK3P51956 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
NEK3P51956 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
NEK3P51956 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.16■□□□□ 0.18
NEK3P51956 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
NEK3P51956 AC011477.6-201ENST00000604980 1927 ntBASIC16.16■□□□□ 0.18
NEK3P51956 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.16■□□□□ 0.18
NEK3P51956 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.16■□□□□ 0.18
NEK3P51956 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.16■□□□□ 0.18
NEK3P51956 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.16■□□□□ 0.18
NEK3P51956 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
NEK3P51956 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
NEK3P51956 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.16■□□□□ 0.18
NEK3P51956 AC004233.3-201ENST00000607794 1269 ntBASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms