Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC15.69■□□□□ 0.1
SHOX2O60902 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.69■□□□□ 0.1
SHOX2O60902 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SHOX2O60902 U1.21-201ENST00000580816 167 ntBASIC15.69■□□□□ 0.1
SHOX2O60902 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC15.69■□□□□ 0.1
SHOX2O60902 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 ARHGEF1-201ENST00000337665 3171 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.69■□□□□ 0.1
SHOX2O60902 DNAJB6-201ENST00000262177 2527 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 BNIP3P1-202ENST00000550043 1585 ntBASIC15.69■□□□□ 0.1
SHOX2O60902 KRT8P24-201ENST00000560290 1559 ntBASIC15.69■□□□□ 0.1
SHOX2O60902 CHPF2-204ENST00000495645 2709 ntTSL 2 BASIC15.69■□□□□ 0.1
SHOX2O60902 NFIC-211ENST00000641145 8399 ntBASIC15.69■□□□□ 0.1
SHOX2O60902 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC15.69■□□□□ 0.1
SHOX2O60902 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 TBL3-208ENST00000615855 2472 ntTSL 5 BASIC15.69■□□□□ 0.1
SHOX2O60902 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SHOX2O60902 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC15.68■□□□□ 0.1
SHOX2O60902 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
SHOX2O60902 ILDR1-205ENST00000462014 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 SLC1A6-201ENST00000221742 1719 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 DNMT3L-201ENST00000270172 1706 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC15.68■□□□□ 0.1
SHOX2O60902 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC15.68■□□□□ 0.1
SHOX2O60902 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SHOX2O60902 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC15.68■□□□□ 0.1
SHOX2O60902 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC15.68■□□□□ 0.1
SHOX2O60902 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SHOX2O60902 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
SHOX2O60902 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SHOX2O60902 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
SHOX2O60902 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SHOX2O60902 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.68■□□□□ 0.1
SHOX2O60902 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 AP000867.3-201ENST00000524675 377 ntBASIC15.68■□□□□ 0.1
SHOX2O60902 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.68■□□□□ 0.1
SHOX2O60902 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 MPI-205ENST00000562606 1052 ntTSL 3 BASIC15.68■□□□□ 0.1
SHOX2O60902 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
SHOX2O60902 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 AL022326.1-202ENST00000641533 845 ntBASIC15.68■□□□□ 0.1
SHOX2O60902 SPACA9-203ENST00000372136 2536 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 PPM1M-201ENST00000296487 2429 ntTSL 2 BASIC15.68■□□□□ 0.1
SHOX2O60902 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 ARHGEF9-230ENST00000637178 2145 ntTSL 5 BASIC15.68■□□□□ 0.1
SHOX2O60902 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.68■□□□□ 0.1
SHOX2O60902 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 RAPGEF3-218ENST00000548919 2776 ntTSL 2 BASIC15.68■□□□□ 0.1
SHOX2O60902 SLC22A2-202ENST00000366953 2597 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHOX2O60902 CATSPERE-201ENST00000366531 3038 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
SHOX2O60902 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SHOX2O60902 TGFBR3-204ENST00000465892 2908 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 SPOCK3-218ENST00000511531 2908 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SHOX2O60902 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SHOX2O60902 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC15.67■□□□□ 0.1
SHOX2O60902 ATRIP-204ENST00000412052 2721 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 AC020658.7-201ENST00000624274 2442 ntBASIC15.67■□□□□ 0.1
SHOX2O60902 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 LRRC20-204ENST00000373224 3095 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SHOX2O60902 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 CYP51A1P2-201ENST00000419457 1499 ntBASIC15.67■□□□□ 0.1
SHOX2O60902 AC138969.3-201ENST00000546612 1459 ntBASIC15.67■□□□□ 0.1
SHOX2O60902 AC138932.2-201ENST00000548268 1459 ntBASIC15.67■□□□□ 0.1
SHOX2O60902 AC126755.4-201ENST00000549796 1459 ntBASIC15.67■□□□□ 0.1
SHOX2O60902 KIFC3-202ENST00000421376 3128 ntTSL 2 BASIC15.67■□□□□ 0.1
SHOX2O60902 RIOK1-202ENST00000379834 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 BOLL-203ENST00000392296 2838 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 AC118758.2-201ENST00000614242 2813 ntBASIC15.67■□□□□ 0.1
SHOX2O60902 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC15.67■□□□□ 0.1
SHOX2O60902 THAP5-204ENST00000438865 868 ntTSL 2 BASIC15.67■□□□□ 0.1
SHOX2O60902 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHOX2O60902 BET1L-206ENST00000486280 665 ntTSL 3 BASIC15.67■□□□□ 0.1
SHOX2O60902 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
SHOX2O60902 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC15.67■□□□□ 0.1
SHOX2O60902 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC15.67■□□□□ 0.1
SHOX2O60902 IL11-204ENST00000590625 1028 ntTSL 2 BASIC15.67■□□□□ 0.1
SHOX2O60902 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC15.67■□□□□ 0.1
SHOX2O60902 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms