Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC14.35□□□□□ -0.11
RSPO3Q9BXY4 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RSPO3Q9BXY4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RSPO3Q9BXY4 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RSPO3Q9BXY4 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RSPO3Q9BXY4 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RSPO3Q9BXY4 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RSPO3Q9BXY4 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 DNAJB3-202ENST00000449667 1266 ntBASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 AC092865.5-201ENST00000545435 363 ntBASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 AL596442.2-201ENST00000610240 980 ntBASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 CETN4P-206ENST00000642099 2168 ntBASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
RSPO3Q9BXY4 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RSPO3Q9BXY4 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RSPO3Q9BXY4 GPC3-202ENST00000394299 2379 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RSPO3Q9BXY4 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
RSPO3Q9BXY4 WDR20-203ENST00000335263 2616 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
RSPO3Q9BXY4 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.33□□□□□ -0.11
RSPO3Q9BXY4 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.11
RSPO3Q9BXY4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 AC104457.1-201ENST00000401024 814 ntBASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 Z92544.3-201ENST00000624747 417 ntBASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 WASH3P-207ENST00000560956 1394 ntBASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 FO538757.1-201ENST00000623083 1397 ntBASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
RSPO3Q9BXY4 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms