Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 SPDYE18-201ENST00000510091 1050 ntBASIC12.13□□□□□ -0.47
CCDC140Q96MF4 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 AC015910.1-201ENST00000579400 975 ntBASIC12.13□□□□□ -0.47
CCDC140Q96MF4 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 FBN2-205ENST00000508989 4987 ntTSL 2 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
CCDC140Q96MF4 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 TSPY26P-202ENST00000565928 3884 ntBASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AC006486.2-201ENST00000624246 2199 ntBASIC12.12□□□□□ -0.47
CCDC140Q96MF4 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AL133267.1-201ENST00000398220 340 ntBASIC12.12□□□□□ -0.47
CCDC140Q96MF4 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 TOMM22P5-201ENST00000416399 439 ntBASIC12.12□□□□□ -0.47
CCDC140Q96MF4 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AC084866.2-201ENST00000509956 449 ntTSL 2 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 DUT-210ENST00000559935 569 ntTSL 3 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AC092337.1-201ENST00000568699 1129 ntBASIC12.12□□□□□ -0.47
CCDC140Q96MF4 PRR29-204ENST00000577953 565 ntTSL 4 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AC004840.1-201ENST00000636359 365 ntBASIC12.12□□□□□ -0.47
CCDC140Q96MF4 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 KRT8P44-201ENST00000441609 1350 ntBASIC12.12□□□□□ -0.47
CCDC140Q96MF4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 TK1-203ENST00000588734 1681 ntTSL 2 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AC023157.3-201ENST00000619086 2088 ntBASIC12.12□□□□□ -0.47
CCDC140Q96MF4 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC12.12□□□□□ -0.47
CCDC140Q96MF4 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms