Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 AL365209.1-201ENST00000624418 6473 ntBASIC14.12□□□□□ -0.15
CPNE4Q96A23 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 SPDYE19P-201ENST00000338590 713 ntBASIC14.12□□□□□ -0.15
CPNE4Q96A23 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 PIN1P1-201ENST00000412108 996 ntBASIC14.12□□□□□ -0.15
CPNE4Q96A23 AC074338.1-201ENST00000416825 156 ntBASIC14.12□□□□□ -0.15
CPNE4Q96A23 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.12□□□□□ -0.15
CPNE4Q96A23 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 TPRX2P-201ENST00000535362 881 ntBASIC14.12□□□□□ -0.15
CPNE4Q96A23 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 MIR4313-201ENST00000580760 101 ntBASIC14.12□□□□□ -0.15
CPNE4Q96A23 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CPNE4Q96A23 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CPNE4Q96A23 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 MIR661-201ENST00000384842 89 ntBASIC14.11□□□□□ -0.15
CPNE4Q96A23 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 SPDYE18-201ENST00000510091 1050 ntBASIC14.11□□□□□ -0.15
CPNE4Q96A23 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.11□□□□□ -0.15
CPNE4Q96A23 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CPNE4Q96A23 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC14.1□□□□□ -0.15
CPNE4Q96A23 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
CPNE4Q96A23 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
CPNE4Q96A23 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms