Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
LMX1AQ8TE12 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 RNA5SP412-201ENST00000516234 123 ntBASIC15.2■□□□□ 0.02
LMX1AQ8TE12 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 USB1-203ENST00000539737 1212 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC15.2■□□□□ 0.02
LMX1AQ8TE12 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 AL138799.1-201ENST00000448213 1675 ntBASIC15.19■□□□□ 0.02
LMX1AQ8TE12 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 LINC02447-202ENST00000501888 2146 ntBASIC15.19■□□□□ 0.02
LMX1AQ8TE12 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 YBX1P6-201ENST00000442962 1002 ntBASIC15.19■□□□□ 0.02
LMX1AQ8TE12 AL355994.2-201ENST00000447882 704 ntBASIC15.19■□□□□ 0.02
LMX1AQ8TE12 KRT18P25-201ENST00000508931 1278 ntBASIC15.19■□□□□ 0.02
LMX1AQ8TE12 AC079316.1-201ENST00000548397 411 ntBASIC15.19■□□□□ 0.02
LMX1AQ8TE12 KRT90P-201ENST00000549264 1064 ntBASIC15.19■□□□□ 0.02
LMX1AQ8TE12 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 RHOXF1P1-202ENST00000635473 501 ntBASIC15.19■□□□□ 0.02
LMX1AQ8TE12 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
LMX1AQ8TE12 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 MIR1908-201ENST00000410394 80 ntBASIC15.18■□□□□ 0.02
LMX1AQ8TE12 AC026954.1-201ENST00000429771 1293 ntBASIC15.18■□□□□ 0.02
LMX1AQ8TE12 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
LMX1AQ8TE12 FAM8A2P-201ENST00000528813 1142 ntBASIC15.18■□□□□ 0.02
LMX1AQ8TE12 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms