Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
UBE3BQ7Z3V4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC19.43■□□□□ 0.7
UBE3BQ7Z3V4 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.43■□□□□ 0.7
UBE3BQ7Z3V4 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
UBE3BQ7Z3V4 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.43■□□□□ 0.7
UBE3BQ7Z3V4 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UBE3BQ7Z3V4 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
UBE3BQ7Z3V4 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
UBE3BQ7Z3V4 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 AC084364.1-201ENST00000551967 1556 ntBASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
UBE3BQ7Z3V4 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 ACKR1-201ENST00000368121 1240 ntBASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 FTH1P14-201ENST00000482930 551 ntBASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 AC093525.8-201ENST00000624099 1342 ntBASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
UBE3BQ7Z3V4 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 KLF2P4-201ENST00000451959 1225 ntBASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 MDH2-205ENST00000461263 648 ntTSL 2 BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC19.4■□□□□ 0.7
UBE3BQ7Z3V4 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 66 ms