Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 TK2-221ENST00000620035 5060 ntTSL 2 BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 RUNX1T1-251ENST00000615601 7372 ntAPPRIS ALT1 TSL 5 BASIC14.54□□□□□ -0.08
NUP54Q7Z3B4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 AC092337.1-201ENST00000568699 1129 ntBASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 PCDHA9-202ENST00000532602 6293 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 AL365209.1-201ENST00000624418 6473 ntBASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
NUP54Q7Z3B4 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 AMT-233ENST00000636522 1620 ntTSL 2 BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 MYO15B-237ENST00000642007 4893 ntBASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
NUP54Q7Z3B4 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 LINC02560-201ENST00000596379 459 ntBASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 SRD5A3P1-201ENST00000603021 949 ntBASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 HFE2-206ENST00000634927 506 ntTSL 4 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.52□□□□□ -0.09
NUP54Q7Z3B4 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms