Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.94■□□□□ 0.62
VPS53Q5VIR6 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 CUL3-201ENST00000264414 6741 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 RASL12-203ENST00000434605 982 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 AC135586.1-201ENST00000539323 574 ntBASIC18.93■□□□□ 0.62
VPS53Q5VIR6 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 AC104794.3-201ENST00000566840 1248 ntBASIC18.93■□□□□ 0.62
VPS53Q5VIR6 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC18.93■□□□□ 0.62
VPS53Q5VIR6 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.92■□□□□ 0.62
VPS53Q5VIR6 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 SERBP1P5-201ENST00000510079 1181 ntBASIC18.92■□□□□ 0.62
VPS53Q5VIR6 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 AC011467.4-201ENST00000594891 528 ntBASIC18.92■□□□□ 0.62
VPS53Q5VIR6 AC074044.1-201ENST00000609673 707 ntBASIC18.92■□□□□ 0.62
VPS53Q5VIR6 AC103702.1-201ENST00000548801 2630 ntBASIC18.92■□□□□ 0.62
VPS53Q5VIR6 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
VPS53Q5VIR6 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 AC087481.3-201ENST00000602886 1894 ntBASIC18.91■□□□□ 0.62
VPS53Q5VIR6 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 TSPY16P-201ENST00000449843 468 ntBASIC18.91■□□□□ 0.62
VPS53Q5VIR6 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 RN7SL204P-201ENST00000582831 262 ntBASIC18.91■□□□□ 0.62
VPS53Q5VIR6 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 RNA5-8SN1-201ENST00000610460 153 ntBASIC18.91■□□□□ 0.62
VPS53Q5VIR6 RNA5-8SN5-202ENST00000612463 153 ntBASIC18.91■□□□□ 0.62
VPS53Q5VIR6 RNA5-8SN4-201ENST00000613359 153 ntBASIC18.91■□□□□ 0.62
VPS53Q5VIR6 RNA5-8SN5-201ENST00000619471 153 ntBASIC18.91■□□□□ 0.62
VPS53Q5VIR6 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
VPS53Q5VIR6 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms