Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC14.05□□□□□ -0.16
CLRN1P58418 AC126177.1-201ENST00000547829 2218 ntBASIC14.05□□□□□ -0.16
CLRN1P58418 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 AL139400.1-201ENST00000366220 510 ntBASIC14.05□□□□□ -0.16
CLRN1P58418 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CLRN1P58418 AC136604.1-201ENST00000418535 575 ntBASIC14.05□□□□□ -0.16
CLRN1P58418 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.05□□□□□ -0.16
CLRN1P58418 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC14.05□□□□□ -0.16
CLRN1P58418 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.05□□□□□ -0.16
CLRN1P58418 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.05□□□□□ -0.16
CLRN1P58418 SLBP-205ENST00000488267 987 ntTSL 2 BASIC14.05□□□□□ -0.16
CLRN1P58418 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC14.05□□□□□ -0.16
CLRN1P58418 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.05□□□□□ -0.16
CLRN1P58418 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
CLRN1P58418 AC097359.3-201ENST00000603982 1210 ntBASIC14.05□□□□□ -0.16
CLRN1P58418 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.05□□□□□ -0.16
CLRN1P58418 PPT1-215ENST00000641471 2368 ntBASIC14.05□□□□□ -0.16
CLRN1P58418 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CLRN1P58418 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.05□□□□□ -0.16
CLRN1P58418 IMPDH1-202ENST00000348127 2479 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
CLRN1P58418 ATXN7-201ENST00000295900 7224 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.05□□□□□ -0.16
CLRN1P58418 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
CLRN1P58418 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CLRN1P58418 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN1P58418 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN1P58418 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CLRN1P58418 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CLRN1P58418 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN1P58418 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN1P58418 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 FAM86GP-201ENST00000448322 971 ntBASIC14.04□□□□□ -0.16
CLRN1P58418 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.04□□□□□ -0.16
CLRN1P58418 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.04□□□□□ -0.16
CLRN1P58418 KLF2P3-201ENST00000451977 1087 ntBASIC14.04□□□□□ -0.16
CLRN1P58418 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN1P58418 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 AC104640.1-201ENST00000562617 2109 ntBASIC14.04□□□□□ -0.16
CLRN1P58418 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.04□□□□□ -0.16
CLRN1P58418 LSM12-202ENST00000585388 942 ntTSL 3 BASIC14.04□□□□□ -0.16
CLRN1P58418 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
CLRN1P58418 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 FO538757.1-201ENST00000623083 1397 ntBASIC14.04□□□□□ -0.16
CLRN1P58418 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN1P58418 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CLRN1P58418 UNC5B-202ENST00000373192 6451 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.04□□□□□ -0.16
CLRN1P58418 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CLRN1P58418 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.04□□□□□ -0.16
CLRN1P58418 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CLRN1P58418 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms