Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 CICP4-201ENST00000447359 2812 ntBASIC15.45■□□□□ 0.06
PKNOX1P55347 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PKNOX1P55347 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.45■□□□□ 0.06
PKNOX1P55347 ACTG1P14-201ENST00000446382 1122 ntBASIC15.45■□□□□ 0.06
PKNOX1P55347 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
PKNOX1P55347 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 IGHV3-62-201ENST00000520057 340 ntBASIC15.45■□□□□ 0.06
PKNOX1P55347 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 AC040169.1-201ENST00000565382 521 ntBASIC15.45■□□□□ 0.06
PKNOX1P55347 COQ9-214ENST00000567933 882 ntTSL 3 BASIC15.45■□□□□ 0.06
PKNOX1P55347 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.45■□□□□ 0.06
PKNOX1P55347 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 LINC01101-201ENST00000622953 1884 ntBASIC15.45■□□□□ 0.06
PKNOX1P55347 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 CYP4F24P-201ENST00000586049 1580 ntBASIC15.45■□□□□ 0.06
PKNOX1P55347 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
PKNOX1P55347 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
PKNOX1P55347 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
PKNOX1P55347 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.44■□□□□ 0.06
PKNOX1P55347 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
PKNOX1P55347 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
PKNOX1P55347 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.44■□□□□ 0.06
PKNOX1P55347 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
PKNOX1P55347 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.44■□□□□ 0.06
PKNOX1P55347 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.44■□□□□ 0.06
PKNOX1P55347 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC15.44■□□□□ 0.06
PKNOX1P55347 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.44■□□□□ 0.06
PKNOX1P55347 AC023274.1-201ENST00000418278 595 ntBASIC15.44■□□□□ 0.06
PKNOX1P55347 MCCD1P2-201ENST00000423228 335 ntBASIC15.44■□□□□ 0.06
PKNOX1P55347 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
PKNOX1P55347 PHKG1P2-201ENST00000457537 863 ntBASIC15.44■□□□□ 0.06
PKNOX1P55347 AC079140.1-201ENST00000508039 487 ntBASIC15.44■□□□□ 0.06
PKNOX1P55347 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.44■□□□□ 0.06
PKNOX1P55347 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC15.44■□□□□ 0.06
PKNOX1P55347 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.44■□□□□ 0.06
PKNOX1P55347 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 NME4-212ENST00000621774 904 ntTSL 3 BASIC15.44■□□□□ 0.06
PKNOX1P55347 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
PKNOX1P55347 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
PKNOX1P55347 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.44■□□□□ 0.06
PKNOX1P55347 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
PKNOX1P55347 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 ZEB1-AS1-208ENST00000607166 2503 ntBASIC15.44■□□□□ 0.06
PKNOX1P55347 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
PKNOX1P55347 MYO15B-237ENST00000642007 4893 ntBASIC15.44■□□□□ 0.06
PKNOX1P55347 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 UCKL1-AS1-201ENST00000623569 3602 ntBASIC15.43■□□□□ 0.06
PKNOX1P55347 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC15.43■□□□□ 0.06
PKNOX1P55347 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 AC127383.1-201ENST00000444697 1800 ntBASIC15.43■□□□□ 0.06
PKNOX1P55347 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.43■□□□□ 0.06
PKNOX1P55347 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
PKNOX1P55347 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
PKNOX1P55347 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC15.43■□□□□ 0.06
PKNOX1P55347 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 64.6 ms