Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.09
MSH3P20585 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
MSH3P20585 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.64■□□□□ 0.09
MSH3P20585 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
MSH3P20585 BCRP1-201ENST00000444246 691 ntBASIC15.64■□□□□ 0.09
MSH3P20585 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 MDH2-205ENST00000461263 648 ntTSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.64■□□□□ 0.09
MSH3P20585 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 TIMM17BP1-201ENST00000545713 516 ntBASIC15.64■□□□□ 0.09
MSH3P20585 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 SPCS2P1-201ENST00000561636 679 ntBASIC15.64■□□□□ 0.09
MSH3P20585 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC15.64■□□□□ 0.09
MSH3P20585 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC15.64■□□□□ 0.09
MSH3P20585 AL096865.1-201ENST00000606796 927 ntBASIC15.64■□□□□ 0.09
MSH3P20585 AC008738.7-201ENST00000609744 511 ntBASIC15.64■□□□□ 0.09
MSH3P20585 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.64■□□□□ 0.09
MSH3P20585 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC15.64■□□□□ 0.09
MSH3P20585 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.64■□□□□ 0.09
MSH3P20585 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
MSH3P20585 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
MSH3P20585 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
MSH3P20585 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
MSH3P20585 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 MIR600HG-201ENST00000449175 5984 ntBASIC15.63■□□□□ 0.09
MSH3P20585 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.63■□□□□ 0.09
MSH3P20585 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC15.63■□□□□ 0.09
MSH3P20585 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC15.63■□□□□ 0.09
MSH3P20585 FAM8A3P-201ENST00000427218 844 ntBASIC15.63■□□□□ 0.09
MSH3P20585 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 AC114501.2-201ENST00000439631 535 ntBASIC15.63■□□□□ 0.09
MSH3P20585 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.63■□□□□ 0.09
MSH3P20585 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.63■□□□□ 0.09
MSH3P20585 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.63■□□□□ 0.09
MSH3P20585 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.63■□□□□ 0.09
MSH3P20585 AC004461.2-201ENST00000629517 803 ntBASIC15.63■□□□□ 0.09
MSH3P20585 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.63■□□□□ 0.09
MSH3P20585 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.63■□□□□ 0.09
MSH3P20585 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
MSH3P20585 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.63■□□□□ 0.09
MSH3P20585 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.62■□□□□ 0.09
MSH3P20585 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC15.62■□□□□ 0.09
MSH3P20585 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
MSH3P20585 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.62■□□□□ 0.09
MSH3P20585 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms