Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 MYCLP2-201ENST00000449268 967 ntBASIC14.28□□□□□ -0.12
HOXD4P09016 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXD4P09016 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXD4P09016 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
HOXD4P09016 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.28□□□□□ -0.12
HOXD4P09016 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.28□□□□□ -0.12
HOXD4P09016 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.28□□□□□ -0.12
HOXD4P09016 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.28□□□□□ -0.12
HOXD4P09016 TMEM261P1-201ENST00000604899 340 ntBASIC14.28□□□□□ -0.12
HOXD4P09016 AC008494.3-201ENST00000606615 944 ntBASIC14.28□□□□□ -0.12
HOXD4P09016 MIR6799-201ENST00000620297 69 ntBASIC14.28□□□□□ -0.12
HOXD4P09016 AC007431.3-201ENST00000623221 587 ntBASIC14.28□□□□□ -0.12
HOXD4P09016 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXD4P09016 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
HOXD4P09016 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC14.28□□□□□ -0.12
HOXD4P09016 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.28□□□□□ -0.12
HOXD4P09016 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC14.28□□□□□ -0.12
HOXD4P09016 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
HOXD4P09016 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
HOXD4P09016 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
HOXD4P09016 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD4P09016 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC14.27□□□□□ -0.12
HOXD4P09016 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.27□□□□□ -0.12
HOXD4P09016 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD4P09016 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC14.27□□□□□ -0.12
HOXD4P09016 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.27□□□□□ -0.12
HOXD4P09016 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
HOXD4P09016 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.27□□□□□ -0.12
HOXD4P09016 KRT8P37-201ENST00000451609 1420 ntBASIC14.27□□□□□ -0.12
HOXD4P09016 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.27□□□□□ -0.12
HOXD4P09016 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXD4P09016 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HOXD4P09016 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXD4P09016 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC14.27□□□□□ -0.13
HOXD4P09016 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXD4P09016 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.27□□□□□ -0.13
HOXD4P09016 AC123567.1-201ENST00000548294 1261 ntBASIC14.27□□□□□ -0.13
HOXD4P09016 AC023310.3-201ENST00000557027 670 ntBASIC14.27□□□□□ -0.13
HOXD4P09016 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
HOXD4P09016 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC14.27□□□□□ -0.13
HOXD4P09016 AC100756.1-201ENST00000562736 682 ntBASIC14.27□□□□□ -0.13
HOXD4P09016 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
HOXD4P09016 AC138749.3-201ENST00000567691 622 ntBASIC14.27□□□□□ -0.13
HOXD4P09016 AC132938.2-201ENST00000579188 680 ntBASIC14.27□□□□□ -0.13
HOXD4P09016 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC14.27□□□□□ -0.13
HOXD4P09016 AC116165.1-201ENST00000611806 668 ntBASIC14.27□□□□□ -0.13
HOXD4P09016 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.27□□□□□ -0.13
HOXD4P09016 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXD4P09016 AL591163.1-201ENST00000641757 987 ntBASIC14.27□□□□□ -0.13
HOXD4P09016 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
HOXD4P09016 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXD4P09016 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXD4P09016 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXD4P09016 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
HOXD4P09016 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXD4P09016 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC14.27□□□□□ -0.13
HOXD4P09016 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.27□□□□□ -0.13
HOXD4P09016 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HOXD4P09016 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC14.26□□□□□ -0.13
HOXD4P09016 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
HOXD4P09016 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
HOXD4P09016 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
HOXD4P09016 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HOXD4P09016 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HOXD4P09016 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HOXD4P09016 AP001282.1-201ENST00000531301 1499 ntBASIC14.26□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 55.3 ms