Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC12.7□□□□□ -0.38
HMGB3O15347 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC12.7□□□□□ -0.38
HMGB3O15347 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC12.7□□□□□ -0.38
HMGB3O15347 RPS15-207ENST00000591032 550 ntTSL 3 BASIC12.7□□□□□ -0.38
HMGB3O15347 RPS15-212ENST00000593052 629 ntTSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC12.7□□□□□ -0.38
HMGB3O15347 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 SYNRG-225ENST00000619541 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 WIZ-203ENST00000545156 4466 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.7□□□□□ -0.38
HMGB3O15347 PITPNM3-202ENST00000421306 6945 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC12.7□□□□□ -0.38
HMGB3O15347 VCP-201ENST00000358901 4370 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 C17orf51-201ENST00000391411 7914 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 U82695.1-201ENST00000635752 1889 ntBASIC12.7□□□□□ -0.38
HMGB3O15347 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
HMGB3O15347 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC12.7□□□□□ -0.38
HMGB3O15347 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.7□□□□□ -0.38
HMGB3O15347 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC12.69□□□□□ -0.38
HMGB3O15347 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 INTS4P1-203ENST00000641008 3683 ntBASIC12.69□□□□□ -0.38
HMGB3O15347 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 PPFIA4-201ENST00000272198 5045 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 AC009090.5-201ENST00000624886 2285 ntBASIC12.69□□□□□ -0.38
HMGB3O15347 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 LTB4R-203ENST00000396789 4110 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC12.69□□□□□ -0.38
HMGB3O15347 PI4KAP1-204ENST00000612579 1703 ntBASIC12.69□□□□□ -0.38
HMGB3O15347 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
HMGB3O15347 FBXL16-201ENST00000324361 3411 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 DPM2-202ENST00000373110 738 ntTSL 2 BASIC12.69□□□□□ -0.38
HMGB3O15347 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
HMGB3O15347 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC12.69□□□□□ -0.38
HMGB3O15347 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC12.69□□□□□ -0.38
HMGB3O15347 KRT17P6-201ENST00000453795 1220 ntBASIC12.69□□□□□ -0.38
HMGB3O15347 CDV3-207ENST00000508481 661 ntTSL 3 BASIC12.69□□□□□ -0.38
HMGB3O15347 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC12.69□□□□□ -0.38
HMGB3O15347 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC12.69□□□□□ -0.38
HMGB3O15347 AC087641.1-201ENST00000557561 1021 ntBASIC12.69□□□□□ -0.38
HMGB3O15347 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
HMGB3O15347 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC12.69□□□□□ -0.38
HMGB3O15347 AC114341.1-201ENST00000618070 349 ntBASIC12.69□□□□□ -0.38
HMGB3O15347 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC12.69□□□□□ -0.38
HMGB3O15347 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC12.69□□□□□ -0.38
HMGB3O15347 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 ZNF740-201ENST00000416904 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 RIC1-204ENST00000418622 6658 ntTSL 5 BASIC12.69□□□□□ -0.38
HMGB3O15347 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC12.69□□□□□ -0.38
HMGB3O15347 WNT7B-201ENST00000339464 3919 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC12.69□□□□□ -0.38
HMGB3O15347 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC12.69□□□□□ -0.38
HMGB3O15347 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
HMGB3O15347 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC12.69□□□□□ -0.38
HMGB3O15347 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 C17orf80-203ENST00000359042 3645 ntAPPRIS P3 TSL 5 BASIC12.69□□□□□ -0.38
HMGB3O15347 RTF1-201ENST00000389629 5021 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
HMGB3O15347 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC12.69□□□□□ -0.38
HMGB3O15347 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HMGB3O15347 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC12.68□□□□□ -0.38
HMGB3O15347 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 CACNA2D1-201ENST00000356253 3858 ntTSL 5 BASIC12.68□□□□□ -0.38
HMGB3O15347 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
HMGB3O15347 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms