Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 STRN-202ENST00000379213 2254 ntTSL 5 BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 ALOX15-201ENST00000293761 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 GRIN1-203ENST00000371550 3940 ntTSL 5 BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 KIAA1211L-201ENST00000397899 3907 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 PLEKHO2-202ENST00000616065 3569 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC11.54□□□□□ -0.56
SMKR1H3BMG3 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 NR3C1-201ENST00000231509 3556 ntAPPRIS ALT1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 AMT-204ENST00000427987 1646 ntTSL 5 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 ARHGAP27-203ENST00000428638 4242 ntAPPRIS P2 TSL 5 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 WASH6P-202ENST00000359512 1437 ntBASIC11.53□□□□□ -0.56
SMKR1H3BMG3 DKFZP434A062-201ENST00000573103 5021 ntBASIC11.53□□□□□ -0.56
SMKR1H3BMG3 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 ZBED1P1-201ENST00000502364 1930 ntBASIC11.53□□□□□ -0.56
SMKR1H3BMG3 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 RNU1-129P-201ENST00000384064 167 ntBASIC11.53□□□□□ -0.56
SMKR1H3BMG3 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 AL031133.1-201ENST00000406807 723 ntBASIC11.53□□□□□ -0.56
SMKR1H3BMG3 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 AP002469.2-201ENST00000531724 424 ntBASIC11.53□□□□□ -0.56
SMKR1H3BMG3 SART3-203ENST00000546611 1184 ntBASIC11.53□□□□□ -0.56
SMKR1H3BMG3 FICD-205ENST00000552758 603 ntTSL 2 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 AC012615.1-201ENST00000565797 1299 ntBASIC11.53□□□□□ -0.56
SMKR1H3BMG3 U1.21-201ENST00000580816 167 ntBASIC11.53□□□□□ -0.56
SMKR1H3BMG3 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 AL365330.1-201ENST00000607459 531 ntBASIC11.53□□□□□ -0.56
SMKR1H3BMG3 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 EIF4G1-218ENST00000434061 5026 ntTSL 2 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 PREP-201ENST00000369110 2905 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 RNPS1-216ENST00000565678 2298 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 OS9-204ENST00000389146 2091 ntTSL 2 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 FLII-221ENST00000578558 2377 ntTSL 5 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 ELF4-201ENST00000308167 4165 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
SMKR1H3BMG3 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 TNK2-202ENST00000381916 4223 ntTSL 2 BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 TSPAN12-201ENST00000222747 2798 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 ZBTB1-201ENST00000358738 4119 ntTSL 1 (best) BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.56
SMKR1H3BMG3 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 RPS15P9-201ENST00000494093 319 ntBASIC11.52□□□□□ -0.57
SMKR1H3BMG3 MIR3180-1-201ENST00000580374 94 ntBASIC11.52□□□□□ -0.57
SMKR1H3BMG3 MIR3180-3-201ENST00000584616 94 ntBASIC11.52□□□□□ -0.57
SMKR1H3BMG3 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 AL732292.2-201ENST00000609649 430 ntBASIC11.52□□□□□ -0.57
SMKR1H3BMG3 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC11.52□□□□□ -0.57
SMKR1H3BMG3 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms