Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 AC007191.1-201ENST00000623179 2995 ntBASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.11
TRIM49D1C9J1S8 RGPD6-202ENST00000330331 2848 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 RGPD8-202ENST00000330575 2848 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 TEAD3-201ENST00000338863 2983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRIM49D1C9J1S8 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 RPL13AP23-201ENST00000480739 586 ntBASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 RPL18-209ENST00000550645 463 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 RPL18-214ENST00000552588 559 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms