Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 GHSR-202ENST00000427970 912 ntBASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 SDHAP3-202ENST00000515467 728 ntBASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
SIX2Q9NPC8 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 CICP23-201ENST00000605013 2741 ntBASIC16.78■□□□□ 0.28
SIX2Q9NPC8 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 DUX4L27-201ENST00000554796 1261 ntBASIC16.78■□□□□ 0.28
SIX2Q9NPC8 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 AJ011931.1-201ENST00000618749 2492 ntBASIC16.78■□□□□ 0.28
SIX2Q9NPC8 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 GSN-203ENST00000373808 2664 ntTSL 2 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
SIX2Q9NPC8 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
SIX2Q9NPC8 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms