Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC28BQ9BUN5 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC28BQ9BUN5 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC15.33■□□□□ 0.04
CCDC28BQ9BUN5 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.33■□□□□ 0.04
CCDC28BQ9BUN5 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.33■□□□□ 0.04
CCDC28BQ9BUN5 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CCDC28BQ9BUN5 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC28BQ9BUN5 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC28BQ9BUN5 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CCDC28BQ9BUN5 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 KCNT1-207ENST00000487664 3845 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 HOXC12-201ENST00000243103 3335 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 ECE1-201ENST00000264205 2381 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 FLJ16779-201ENST00000612722 7638 ntBASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 PHKG1P2-201ENST00000457537 863 ntBASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 AL121912.1-201ENST00000603683 238 ntBASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 AL445228.2-201ENST00000605589 952 ntBASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CCDC28BQ9BUN5 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 CASR-202ENST00000498619 5009 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 IQCE-201ENST00000325979 2179 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 AC009947.1-201ENST00000444350 727 ntBASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 BABAM1-206ENST00000595632 966 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 AC148477.8-201ENST00000624298 468 ntBASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 WASH3P-207ENST00000560956 1394 ntBASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 FO538757.1-201ENST00000623083 1397 ntBASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC15.31■□□□□ 0.04
CCDC28BQ9BUN5 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 81.7 ms