Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.18□□□□□ -0.14
USB1Q9BQ65 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 RPS14P4-201ENST00000415880 418 ntBASIC14.18□□□□□ -0.14
USB1Q9BQ65 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.18□□□□□ -0.14
USB1Q9BQ65 AC004890.2-204ENST00000481968 304 ntBASIC14.18□□□□□ -0.14
USB1Q9BQ65 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 AC190387.1-201ENST00000551683 408 ntBASIC14.18□□□□□ -0.14
USB1Q9BQ65 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 SPDYE12P-201ENST00000618416 771 ntBASIC14.18□□□□□ -0.14
USB1Q9BQ65 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 TOMM40L-201ENST00000367987 2636 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.18□□□□□ -0.14
USB1Q9BQ65 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USB1Q9BQ65 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 P3H1-201ENST00000236040 2993 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 FO393414.2-201ENST00000405153 598 ntBASIC14.17□□□□□ -0.14
USB1Q9BQ65 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 SSH2-210ENST00000582084 560 ntTSL 3 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 AC027307.3-201ENST00000594262 1100 ntBASIC14.17□□□□□ -0.14
USB1Q9BQ65 LINC02084-201ENST00000606069 1096 ntBASIC14.17□□□□□ -0.14
USB1Q9BQ65 AL133215.2-201ENST00000609242 977 ntBASIC14.17□□□□□ -0.14
USB1Q9BQ65 MIR6069-201ENST00000620069 79 ntBASIC14.17□□□□□ -0.14
USB1Q9BQ65 AL031430.1-201ENST00000642067 1039 ntBASIC14.17□□□□□ -0.14
USB1Q9BQ65 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 KRT8P12-202ENST00000472924 1397 ntBASIC14.17□□□□□ -0.14
USB1Q9BQ65 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 CR383656.2-201ENST00000548656 2254 ntBASIC14.17□□□□□ -0.14
USB1Q9BQ65 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 WLS-201ENST00000262348 2748 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
USB1Q9BQ65 AC022144.1-201ENST00000602255 1580 ntBASIC14.17□□□□□ -0.14
USB1Q9BQ65 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
USB1Q9BQ65 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms