Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
FOXA1P55317 STOM-202ENST00000347359 870 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA1P55317 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
FOXA1P55317 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 AL627223.1-201ENST00000416693 442 ntBASIC15.21■□□□□ 0.03
FOXA1P55317 AL353705.2-201ENST00000428243 662 ntBASIC15.21■□□□□ 0.03
FOXA1P55317 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA1P55317 TSFM-210ENST00000550559 897 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA1P55317 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC15.21■□□□□ 0.03
FOXA1P55317 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.21■□□□□ 0.03
FOXA1P55317 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
FOXA1P55317 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 AL133215.2-201ENST00000609242 977 ntBASIC15.21■□□□□ 0.03
FOXA1P55317 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA1P55317 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.21■□□□□ 0.03
FOXA1P55317 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.21■□□□□ 0.03
FOXA1P55317 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.03
FOXA1P55317 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.21■□□□□ 0.03
FOXA1P55317 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
FOXA1P55317 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
FOXA1P55317 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.21■□□□□ 0.02
FOXA1P55317 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA1P55317 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA1P55317 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA1P55317 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.02
FOXA1P55317 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC15.21■□□□□ 0.02
FOXA1P55317 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
FOXA1P55317 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
FOXA1P55317 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
FOXA1P55317 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC15.2■□□□□ 0.02
FOXA1P55317 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.2■□□□□ 0.02
FOXA1P55317 FGD5P1-202ENST00000614866 2498 ntBASIC15.2■□□□□ 0.02
FOXA1P55317 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
FOXA1P55317 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.2■□□□□ 0.02
FOXA1P55317 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
FOXA1P55317 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.2■□□□□ 0.02
FOXA1P55317 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.2■□□□□ 0.02
FOXA1P55317 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC15.2■□□□□ 0.02
FOXA1P55317 AC005829.1-201ENST00000570002 483 ntBASIC15.2■□□□□ 0.02
FOXA1P55317 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC15.2■□□□□ 0.02
FOXA1P55317 MIR4469-201ENST00000583919 79 ntBASIC15.2■□□□□ 0.02
FOXA1P55317 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
FOXA1P55317 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.2■□□□□ 0.02
FOXA1P55317 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.2■□□□□ 0.02
FOXA1P55317 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.2■□□□□ 0.02
FOXA1P55317 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.2■□□□□ 0.02
FOXA1P55317 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
FOXA1P55317 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.2■□□□□ 0.02
FOXA1P55317 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
FOXA1P55317 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
FOXA1P55317 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 AC084364.1-201ENST00000551967 1556 ntBASIC15.19■□□□□ 0.02
FOXA1P55317 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.19■□□□□ 0.02
FOXA1P55317 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.19■□□□□ 0.02
FOXA1P55317 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.19■□□□□ 0.02
FOXA1P55317 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.19■□□□□ 0.02
FOXA1P55317 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.19■□□□□ 0.02
FOXA1P55317 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.19■□□□□ 0.02
FOXA1P55317 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
FOXA1P55317 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 SPDYE17-201ENST00000412399 783 ntBASIC15.19■□□□□ 0.02
FOXA1P55317 SPDYE14P-201ENST00000442619 822 ntBASIC15.19■□□□□ 0.02
FOXA1P55317 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC15.19■□□□□ 0.02
FOXA1P55317 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
FOXA1P55317 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.19■□□□□ 0.02
FOXA1P55317 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.19■□□□□ 0.02
FOXA1P55317 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC15.19■□□□□ 0.02
FOXA1P55317 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC15.19■□□□□ 0.02
FOXA1P55317 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.19■□□□□ 0.02
FOXA1P55317 AC003101.2-201ENST00000612557 442 ntBASIC15.19■□□□□ 0.02
FOXA1P55317 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms