Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 AC125807.1-201ENST00000483097 614 ntBASIC16.36■□□□□ 0.21
CDH6P55285 AC067863.1-201ENST00000494933 530 ntBASIC16.36■□□□□ 0.21
CDH6P55285 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.36■□□□□ 0.21
CDH6P55285 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC16.36■□□□□ 0.21
CDH6P55285 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC16.36■□□□□ 0.21
CDH6P55285 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.36■□□□□ 0.21
CDH6P55285 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.36■□□□□ 0.21
CDH6P55285 AL033527.5-202ENST00000641632 1098 ntBASIC16.36■□□□□ 0.21
CDH6P55285 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH6P55285 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.36■□□□□ 0.21
CDH6P55285 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
CDH6P55285 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH6P55285 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH6P55285 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CDH6P55285 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC16.36■□□□□ 0.21
CDH6P55285 FO538757.1-201ENST00000623083 1397 ntBASIC16.36■□□□□ 0.21
CDH6P55285 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH6P55285 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CDH6P55285 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC16.36■□□□□ 0.21
CDH6P55285 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.35■□□□□ 0.21
CDH6P55285 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 HLA-V-204ENST00000476601 1289 ntBASIC16.35■□□□□ 0.21
CDH6P55285 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.35■□□□□ 0.21
CDH6P55285 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.35■□□□□ 0.21
CDH6P55285 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC16.35■□□□□ 0.21
CDH6P55285 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC16.35■□□□□ 0.21
CDH6P55285 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.35■□□□□ 0.21
CDH6P55285 AL138828.2-201ENST00000615812 383 ntBASIC16.35■□□□□ 0.21
CDH6P55285 AC093028.1-201ENST00000622998 982 ntBASIC16.35■□□□□ 0.21
CDH6P55285 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC16.35■□□□□ 0.21
CDH6P55285 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 STK33-217ENST00000534493 1895 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.35■□□□□ 0.21
CDH6P55285 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
CDH6P55285 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
CDH6P55285 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CDH6P55285 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC16.34■□□□□ 0.21
CDH6P55285 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC16.34■□□□□ 0.21
CDH6P55285 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.34■□□□□ 0.21
CDH6P55285 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 FAM86GP-201ENST00000448322 971 ntBASIC16.34■□□□□ 0.21
CDH6P55285 KLF2P3-201ENST00000451977 1087 ntBASIC16.34■□□□□ 0.21
CDH6P55285 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC16.34■□□□□ 0.21
CDH6P55285 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.34■□□□□ 0.21
CDH6P55285 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.34■□□□□ 0.21
CDH6P55285 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.34■□□□□ 0.21
CDH6P55285 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.34■□□□□ 0.21
CDH6P55285 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC16.34■□□□□ 0.21
CDH6P55285 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.34■□□□□ 0.21
CDH6P55285 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CDH6P55285 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC16.34■□□□□ 0.21
CDH6P55285 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.34■□□□□ 0.21
CDH6P55285 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
CDH6P55285 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms