Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 FDFT1-223ENST00000615631 2462 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
CDX1P47902 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC12.93□□□□□ -0.34
CDX1P47902 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC12.93□□□□□ -0.34
CDX1P47902 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 OR2I1P-209ENST00000641730 5365 ntBASIC12.92□□□□□ -0.34
CDX1P47902 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 PON3-203ENST00000427422 894 ntTSL 3 BASIC12.92□□□□□ -0.34
CDX1P47902 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC12.92□□□□□ -0.34
CDX1P47902 AC005237.2-201ENST00000434368 219 ntBASIC12.92□□□□□ -0.34
CDX1P47902 METTL21AP1-201ENST00000438852 635 ntBASIC12.92□□□□□ -0.34
CDX1P47902 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 AC023141.5-201ENST00000458585 616 ntBASIC12.92□□□□□ -0.34
CDX1P47902 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC12.92□□□□□ -0.34
CDX1P47902 IGHV3-62-201ENST00000520057 340 ntBASIC12.92□□□□□ -0.34
CDX1P47902 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC12.92□□□□□ -0.34
CDX1P47902 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC12.92□□□□□ -0.34
CDX1P47902 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.92□□□□□ -0.34
CDX1P47902 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 AC027612.4-201ENST00000605371 583 ntBASIC12.92□□□□□ -0.34
CDX1P47902 AC117489.1-201ENST00000625169 3217 ntBASIC12.92□□□□□ -0.34
CDX1P47902 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 AL139011.1-202ENST00000642063 584 ntBASIC12.92□□□□□ -0.34
CDX1P47902 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 SPPL3-201ENST00000353487 4148 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 UBE2D1-201ENST00000373910 2659 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
CDX1P47902 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
CDX1P47902 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC12.92□□□□□ -0.34
CDX1P47902 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
CDX1P47902 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC12.91□□□□□ -0.34
CDX1P47902 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
CDX1P47902 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC12.91□□□□□ -0.34
CDX1P47902 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
CDX1P47902 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms