Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 GLI4-203ENST00000517468 963 ntTSL 5 BASIC16.52■□□□□ 0.24
BDNFP23560 NEU3-203ENST00000529024 581 ntTSL 3 BASIC16.52■□□□□ 0.24
BDNFP23560 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.52■□□□□ 0.24
BDNFP23560 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.52■□□□□ 0.24
BDNFP23560 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.52■□□□□ 0.24
BDNFP23560 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.52■□□□□ 0.24
BDNFP23560 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
BDNFP23560 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC16.52■□□□□ 0.23
BDNFP23560 AP005117.1-202ENST00000581724 1908 ntBASIC16.52■□□□□ 0.23
BDNFP23560 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
BDNFP23560 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
BDNFP23560 AGK-211ENST00000629555 2765 ntTSL 5 BASIC16.52■□□□□ 0.23
BDNFP23560 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
BDNFP23560 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
BDNFP23560 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.52■□□□□ 0.23
BDNFP23560 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.52■□□□□ 0.23
BDNFP23560 INTS4P2-202ENST00000614726 2019 ntBASIC16.52■□□□□ 0.23
BDNFP23560 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.51■□□□□ 0.23
BDNFP23560 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.51■□□□□ 0.23
BDNFP23560 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
BDNFP23560 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
BDNFP23560 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.51■□□□□ 0.23
BDNFP23560 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.51■□□□□ 0.23
BDNFP23560 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.51■□□□□ 0.23
BDNFP23560 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC16.51■□□□□ 0.23
BDNFP23560 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC16.51■□□□□ 0.23
BDNFP23560 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.51■□□□□ 0.23
BDNFP23560 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
BDNFP23560 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.51■□□□□ 0.23
BDNFP23560 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.51■□□□□ 0.23
BDNFP23560 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC16.51■□□□□ 0.23
BDNFP23560 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.51■□□□□ 0.23
BDNFP23560 KRT8P22-201ENST00000562317 1415 ntBASIC16.51■□□□□ 0.23
BDNFP23560 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
BDNFP23560 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
BDNFP23560 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.51■□□□□ 0.23
BDNFP23560 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC16.51■□□□□ 0.23
BDNFP23560 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
BDNFP23560 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
BDNFP23560 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.5■□□□□ 0.23
BDNFP23560 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
BDNFP23560 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
BDNFP23560 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
BDNFP23560 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
BDNFP23560 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 PGF-202ENST00000405431 666 ntTSL 5 BASIC16.5■□□□□ 0.23
BDNFP23560 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC16.5■□□□□ 0.23
BDNFP23560 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC16.5■□□□□ 0.23
BDNFP23560 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC16.5■□□□□ 0.23
BDNFP23560 RPL13AP25-201ENST00000484130 612 ntBASIC16.5■□□□□ 0.23
BDNFP23560 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
BDNFP23560 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.5■□□□□ 0.23
BDNFP23560 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.5■□□□□ 0.23
BDNFP23560 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC16.5■□□□□ 0.23
BDNFP23560 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
BDNFP23560 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
BDNFP23560 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.5■□□□□ 0.23
BDNFP23560 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
BDNFP23560 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC16.5■□□□□ 0.23
BDNFP23560 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.49■□□□□ 0.23
BDNFP23560 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC16.49■□□□□ 0.23
BDNFP23560 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
BDNFP23560 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
BDNFP23560 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms