Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
CDH3P22223 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH3P22223 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
CDH3P22223 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH3P22223 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH3P22223 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH3P22223 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
CDH3P22223 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.48■□□□□ 0.07
CDH3P22223 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH3P22223 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH3P22223 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH3P22223 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH3P22223 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
CDH3P22223 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 R3HDM2P2-201ENST00000401880 2116 ntBASIC15.47■□□□□ 0.07
CDH3P22223 LILRP2-201ENST00000413439 2127 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 AC006449.6-201ENST00000612330 2296 ntBASIC15.47■□□□□ 0.07
CDH3P22223 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
CDH3P22223 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
CDH3P22223 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH3P22223 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH3P22223 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.47■□□□□ 0.07
CDH3P22223 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
CDH3P22223 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH3P22223 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.47■□□□□ 0.07
CDH3P22223 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.47■□□□□ 0.07
CDH3P22223 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.47■□□□□ 0.07
CDH3P22223 AC009477.1-201ENST00000452936 217 ntBASIC15.47■□□□□ 0.07
CDH3P22223 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 AL512361.1-201ENST00000554200 418 ntBASIC15.47■□□□□ 0.07
CDH3P22223 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC15.47■□□□□ 0.07
CDH3P22223 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
CDH3P22223 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 AL033527.5-202ENST00000641632 1098 ntBASIC15.47■□□□□ 0.07
CDH3P22223 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.47■□□□□ 0.07
CDH3P22223 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.47■□□□□ 0.07
CDH3P22223 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
CDH3P22223 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC15.47■□□□□ 0.07
CDH3P22223 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
CDH3P22223 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH3P22223 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
CDH3P22223 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH3P22223 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
CDH3P22223 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
CDH3P22223 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH3P22223 MIR661-201ENST00000384842 89 ntBASIC15.46■□□□□ 0.07
CDH3P22223 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH3P22223 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC15.46■□□□□ 0.07
CDH3P22223 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 POLD4-211ENST00000539074 714 ntTSL 3 BASIC15.46■□□□□ 0.07
CDH3P22223 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
CDH3P22223 YTHDF3-AS1-201ENST00000603538 718 ntBASIC15.46■□□□□ 0.07
CDH3P22223 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
CDH3P22223 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.46■□□□□ 0.07
CDH3P22223 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
CDH3P22223 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.46■□□□□ 0.07
CDH3P22223 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
CDH3P22223 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CDH3P22223 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
CDH3P22223 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
CDH3P22223 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.06
CDH3P22223 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
CDH3P22223 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.46■□□□□ 0.06
CDH3P22223 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
CDH3P22223 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms