Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC15.87■□□□□ 0.13
VCANP13611 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.87■□□□□ 0.13
VCANP13611 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 SNORD3B-2-202ENST00000571722 791 ntBASIC15.87■□□□□ 0.13
VCANP13611 MBP-238ENST00000580402 915 ntTSL 5 BASIC15.87■□□□□ 0.13
VCANP13611 RPS5-204ENST00000598098 536 ntTSL 2 BASIC15.87■□□□□ 0.13
VCANP13611 NUDT2-204ENST00000618590 825 ntAPPRIS P1 TSL 3 BASIC15.87■□□□□ 0.13
VCANP13611 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC15.87■□□□□ 0.13
VCANP13611 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
VCANP13611 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
VCANP13611 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC15.86■□□□□ 0.13
VCANP13611 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 PEMT-204ENST00000395783 1008 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC15.86■□□□□ 0.13
VCANP13611 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 SLC9A3R2-204ENST00000563587 1037 ntTSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 AC026803.1-201ENST00000569130 274 ntBASIC15.86■□□□□ 0.13
VCANP13611 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.86■□□□□ 0.13
VCANP13611 SRPX-201ENST00000378533 1874 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.86■□□□□ 0.13
VCANP13611 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 SPATA8-201ENST00000328504 1083 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 MIR663AHG-201ENST00000427348 1213 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 AL135901.1-201ENST00000451812 333 ntBASIC15.86■□□□□ 0.13
VCANP13611 AC005597.1-201ENST00000588092 420 ntTSL 3 BASIC15.86■□□□□ 0.13
VCANP13611 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.86■□□□□ 0.13
VCANP13611 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
VCANP13611 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.86■□□□□ 0.13
VCANP13611 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC15.86■□□□□ 0.13
VCANP13611 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
VCANP13611 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC15.86■□□□□ 0.13
VCANP13611 EMC4-208ENST00000559078 599 ntTSL 3 BASIC15.86■□□□□ 0.13
VCANP13611 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.86■□□□□ 0.13
VCANP13611 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
VCANP13611 AC010335.1-201ENST00000594590 599 ntTSL 3 BASIC15.86■□□□□ 0.13
VCANP13611 PSME2-217ENST00000615264 874 ntTSL 5 BASIC15.86■□□□□ 0.13
VCANP13611 ENPP7P14-201ENST00000621765 1040 ntBASIC15.86■□□□□ 0.13
VCANP13611 AC073592.2-201ENST00000623062 780 ntBASIC15.86■□□□□ 0.13
VCANP13611 PSME2-218ENST00000630027 185 ntTSL 3 BASIC15.86■□□□□ 0.13
VCANP13611 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.86■□□□□ 0.13
VCANP13611 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.85■□□□□ 0.13
VCANP13611 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC15.85■□□□□ 0.13
VCANP13611 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
VCANP13611 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 AC008764.6-201ENST00000595909 2069 ntBASIC15.85■□□□□ 0.13
VCANP13611 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VCANP13611 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
VCANP13611 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 GHSR-202ENST00000427970 912 ntBASIC15.85■□□□□ 0.13
VCANP13611 AC087620.1-201ENST00000520037 447 ntTSL 3 BASIC15.85■□□□□ 0.13
VCANP13611 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC15.85■□□□□ 0.13
VCANP13611 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
VCANP13611 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 AC132872.4-202ENST00000622924 2756 ntBASIC15.85■□□□□ 0.13
VCANP13611 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
VCANP13611 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC15.85■□□□□ 0.13
VCANP13611 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
VCANP13611 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC15.85■□□□□ 0.13
VCANP13611 CHCHD2P2-201ENST00000503744 321 ntBASIC15.85■□□□□ 0.13
VCANP13611 AC009779.1-201ENST00000551138 283 ntBASIC15.85■□□□□ 0.13
VCANP13611 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC15.85■□□□□ 0.13
VCANP13611 AC107464.3-201ENST00000609172 737 ntBASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms