Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 MCEMP1-202ENST00000597445 763 ntAPPRIS ALT2 TSL 3 BASIC15.87■□□□□ 0.13
COL6A3P12111 AC005759.1-202ENST00000599416 415 ntTSL 3 BASIC15.87■□□□□ 0.13
COL6A3P12111 AC080013.5-201ENST00000607044 679 ntBASIC15.87■□□□□ 0.13
COL6A3P12111 Z98259.2-201ENST00000641583 609 ntBASIC15.87■□□□□ 0.13
COL6A3P12111 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.87■□□□□ 0.13
COL6A3P12111 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.87■□□□□ 0.13
COL6A3P12111 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 AC067852.2-201ENST00000590513 2313 ntBASIC15.87■□□□□ 0.13
COL6A3P12111 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC15.87■□□□□ 0.13
COL6A3P12111 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC15.87■□□□□ 0.13
COL6A3P12111 AC008536.3-201ENST00000623282 1599 ntBASIC15.87■□□□□ 0.13
COL6A3P12111 RN7SL173P-201ENST00000461853 292 ntBASIC15.87■□□□□ 0.13
COL6A3P12111 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC15.87■□□□□ 0.13
COL6A3P12111 AC020922.4-201ENST00000621389 339 ntBASIC15.87■□□□□ 0.13
COL6A3P12111 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC15.87■□□□□ 0.13
COL6A3P12111 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.87■□□□□ 0.13
COL6A3P12111 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 AGER-201ENST00000375055 1369 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC15.87■□□□□ 0.13
COL6A3P12111 AP000358.1-201ENST00000456260 156 ntBASIC15.87■□□□□ 0.13
COL6A3P12111 RNASEK-204ENST00000552039 591 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC15.87■□□□□ 0.13
COL6A3P12111 MT3-203ENST00000565838 421 ntTSL 3 BASIC15.87■□□□□ 0.13
COL6A3P12111 AC009560.1-201ENST00000620208 434 ntBASIC15.87■□□□□ 0.13
COL6A3P12111 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
COL6A3P12111 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
COL6A3P12111 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
COL6A3P12111 HLA-DQB1-202ENST00000399079 1501 ntBASIC15.86■□□□□ 0.13
COL6A3P12111 ECH1-201ENST00000221418 1411 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A3P12111 TSPAN3-205ENST00000558745 1340 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A3P12111 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A3P12111 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 AL929302.1-201ENST00000426556 871 ntBASIC15.86■□□□□ 0.13
COL6A3P12111 MAGEA7P-201ENST00000436482 942 ntBASIC15.86■□□□□ 0.13
COL6A3P12111 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A3P12111 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A3P12111 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 AL592424.1-201ENST00000563624 1536 ntBASIC15.86■□□□□ 0.13
COL6A3P12111 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A3P12111 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
COL6A3P12111 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
COL6A3P12111 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
COL6A3P12111 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A3P12111 ORAOV1-211ENST00000542341 775 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A3P12111 AC022966.2-201ENST00000587434 367 ntBASIC15.86■□□□□ 0.13
COL6A3P12111 AC097359.3-201ENST00000603982 1210 ntBASIC15.86■□□□□ 0.13
COL6A3P12111 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A3P12111 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A3P12111 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A3P12111 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A3P12111 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A3P12111 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A3P12111 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.86■□□□□ 0.13
COL6A3P12111 SLC6A9-203ENST00000372306 1926 ntTSL 2 BASIC15.86■□□□□ 0.13
COL6A3P12111 RNF212-201ENST00000333673 1019 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
COL6A3P12111 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC15.85■□□□□ 0.13
COL6A3P12111 LINC00824-204ENST00000520766 597 ntTSL 5 BASIC15.85■□□□□ 0.13
COL6A3P12111 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC15.85■□□□□ 0.13
COL6A3P12111 IDH3A-224ENST00000629769 114 ntTSL 5 BASIC15.85■□□□□ 0.13
COL6A3P12111 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 JPT1-202ENST00000356033 1519 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
COL6A3P12111 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A3P12111 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A3P12111 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.85■□□□□ 0.13
COL6A3P12111 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 AC020910.5-201ENST00000623668 1865 ntBASIC15.85■□□□□ 0.13
COL6A3P12111 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC15.85■□□□□ 0.13
COL6A3P12111 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
COL6A3P12111 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC15.85■□□□□ 0.13
COL6A3P12111 EIF3FP3-201ENST00000434851 1086 ntBASIC15.85■□□□□ 0.13
COL6A3P12111 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC15.85■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms