Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.1■□□□□ 0.01
SEMA3DO95025 AC090616.6-203ENST00000579186 1945 ntBASIC15.1■□□□□ 0.01
SEMA3DO95025 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.1■□□□□ 0.01
SEMA3DO95025 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.1■□□□□ 0.01
SEMA3DO95025 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.1■□□□□ 0.01
SEMA3DO95025 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.1■□□□□ 0.01
SEMA3DO95025 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 HLA-V-204ENST00000476601 1289 ntBASIC15.1■□□□□ 0.01
SEMA3DO95025 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.1■□□□□ 0.01
SEMA3DO95025 AC109322.1-201ENST00000524499 1264 ntBASIC15.1■□□□□ 0.01
SEMA3DO95025 VPS29-207ENST00000549970 818 ntTSL 3 BASIC15.1■□□□□ 0.01
SEMA3DO95025 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.1■□□□□ 0.01
SEMA3DO95025 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.1■□□□□ 0.01
SEMA3DO95025 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.1■□□□□ 0.01
SEMA3DO95025 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC15.1■□□□□ 0.01
SEMA3DO95025 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SEMA3DO95025 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SEMA3DO95025 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SEMA3DO95025 AC092127.1-201ENST00000567093 3455 ntBASIC15.1■□□□□ 0.01
SEMA3DO95025 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.1■□□□□ 0.01
SEMA3DO95025 MIR600HG-201ENST00000449175 5984 ntBASIC15.1■□□□□ 0.01
SEMA3DO95025 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SEMA3DO95025 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.1■□□□□ 0.01
SEMA3DO95025 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
SEMA3DO95025 ATG4B-205ENST00000404914 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
SEMA3DO95025 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC15.1■□□□□ 0.01
SEMA3DO95025 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.09■□□□□ 0.01
SEMA3DO95025 AC127383.1-201ENST00000444697 1800 ntBASIC15.09■□□□□ 0.01
SEMA3DO95025 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
SEMA3DO95025 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 AL139400.1-201ENST00000366220 510 ntBASIC15.09■□□□□ 0.01
SEMA3DO95025 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 HNRNPFP1-201ENST00000391730 1133 ntBASIC15.09■□□□□ 0.01
SEMA3DO95025 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC15.09■□□□□ 0.01
SEMA3DO95025 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.09■□□□□ 0.01
SEMA3DO95025 AL645939.2-201ENST00000427340 991 ntBASIC15.09■□□□□ 0.01
SEMA3DO95025 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.09■□□□□ 0.01
SEMA3DO95025 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.09■□□□□ 0.01
SEMA3DO95025 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.09■□□□□ 0.01
SEMA3DO95025 AC025678.2-201ENST00000562061 970 ntBASIC15.09■□□□□ 0.01
SEMA3DO95025 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.09■□□□□ 0.01
SEMA3DO95025 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC15.09■□□□□ 0.01
SEMA3DO95025 MIR6069-201ENST00000620069 79 ntBASIC15.09■□□□□ 0.01
SEMA3DO95025 AL607033.1-201ENST00000623900 1599 ntBASIC15.09■□□□□ 0.01
SEMA3DO95025 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.09■□□□□ 0.01
SEMA3DO95025 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
SEMA3DO95025 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC15.09■□□□□ 0.01
SEMA3DO95025 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SEMA3DO95025 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.09■□□□□ 0.01
SEMA3DO95025 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
SEMA3DO95025 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0.01
SEMA3DO95025 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.08■□□□□ 0.01
SEMA3DO95025 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC15.08■□□□□ 0.01
SEMA3DO95025 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SEMA3DO95025 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
SEMA3DO95025 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.08■□□□□ 0.01
SEMA3DO95025 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
SEMA3DO95025 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SEMA3DO95025 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0.01
SEMA3DO95025 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
SEMA3DO95025 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0.01
SEMA3DO95025 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SEMA3DO95025 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.08■□□□□ 0
SEMA3DO95025 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC15.08■□□□□ 0
SEMA3DO95025 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.08■□□□□ 0
SEMA3DO95025 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.08■□□□□ 0
SEMA3DO95025 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SEMA3DO95025 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms