Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
HMGB3O15347 PDE8A-201ENST00000310298 3984 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 RGMB-201ENST00000308234 4580 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 AC232323.1-201ENST00000540724 2099 ntBASIC12.71□□□□□ -0.37
HMGB3O15347 REXO1L5P-201ENST00000622260 2098 ntBASIC12.71□□□□□ -0.37
HMGB3O15347 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
HMGB3O15347 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 WASHC2A-209ENST00000611324 4417 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
HMGB3O15347 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.71□□□□□ -0.37
HMGB3O15347 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 LINC01230-201ENST00000625222 3017 ntBASIC12.71□□□□□ -0.37
HMGB3O15347 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC12.71□□□□□ -0.37
HMGB3O15347 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 NUDCD3-202ENST00000355451 8256 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 AC112693.3-201ENST00000624819 1983 ntBASIC12.71□□□□□ -0.37
HMGB3O15347 COG5-202ENST00000347053 4532 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 PRKAB2-201ENST00000254101 5417 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 CHCHD2P8-201ENST00000429873 447 ntBASIC12.71□□□□□ -0.37
HMGB3O15347 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 BX276092.5-203ENST00000456199 560 ntBASIC12.71□□□□□ -0.37
HMGB3O15347 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC12.71□□□□□ -0.37
HMGB3O15347 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
HMGB3O15347 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC12.71□□□□□ -0.37
HMGB3O15347 LINC01238-205ENST00000567549 1107 ntBASIC12.71□□□□□ -0.37
HMGB3O15347 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC12.71□□□□□ -0.37
HMGB3O15347 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC12.71□□□□□ -0.37
HMGB3O15347 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC12.71□□□□□ -0.37
HMGB3O15347 AC073592.4-201ENST00000623827 446 ntBASIC12.71□□□□□ -0.37
HMGB3O15347 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC12.71□□□□□ -0.37
HMGB3O15347 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.37
HMGB3O15347 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
HMGB3O15347 SMOC2-201ENST00000354536 3150 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC12.71□□□□□ -0.37
HMGB3O15347 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
HMGB3O15347 SMCR8-201ENST00000406438 8279 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
HMGB3O15347 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
HMGB3O15347 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.38
HMGB3O15347 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 FGD2-201ENST00000274963 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 ZNF106-205ENST00000565611 5081 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC12.71□□□□□ -0.38
HMGB3O15347 AGAP7P-201ENST00000582299 2062 ntBASIC12.71□□□□□ -0.38
HMGB3O15347 AGAP14-201ENST00000624701 2060 ntBASIC12.71□□□□□ -0.38
HMGB3O15347 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 TOX3-201ENST00000219746 3233 ntAPPRIS P4 TSL 2 BASIC12.71□□□□□ -0.38
HMGB3O15347 BAIAP3-201ENST00000324385 4678 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC12.71□□□□□ -0.38
HMGB3O15347 CFAP74-209ENST00000493964 5247 ntAPPRIS P5 TSL 5 BASIC12.71□□□□□ -0.38
HMGB3O15347 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC12.71□□□□□ -0.38
HMGB3O15347 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
HMGB3O15347 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC12.71□□□□□ -0.38
HMGB3O15347 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 MYO7A-205ENST00000458637 7336 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 CNTNAP5-202ENST00000431078 5284 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.7□□□□□ -0.38
HMGB3O15347 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC12.7□□□□□ -0.38
HMGB3O15347 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 AC005912.2-201ENST00000619492 2400 ntBASIC12.7□□□□□ -0.38
HMGB3O15347 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 KRT18P1-202ENST00000452408 1331 ntBASIC12.7□□□□□ -0.38
HMGB3O15347 ABR-228ENST00000574437 3196 ntTSL 5 BASIC12.7□□□□□ -0.38
HMGB3O15347 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 PARN-202ENST00000420015 2360 ntTSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC12.7□□□□□ -0.38
HMGB3O15347 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC12.7□□□□□ -0.38
HMGB3O15347 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC12.7□□□□□ -0.38
HMGB3O15347 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HMGB3O15347 ABCD1P5-201ENST00000445663 754 ntBASIC12.7□□□□□ -0.38
HMGB3O15347 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms