Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A3BPQ9Y5P4 AC073347.1-201ENST00000421633 2643 ntBASIC17.57■□□□□ 0.4
COL4A3BPQ9Y5P4 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A3BPQ9Y5P4 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC17.57■□□□□ 0.4
COL4A3BPQ9Y5P4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC17.57■□□□□ 0.4
COL4A3BPQ9Y5P4 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A3BPQ9Y5P4 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A3BPQ9Y5P4 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A3BPQ9Y5P4 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
COL4A3BPQ9Y5P4 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC020658.6-201ENST00000623564 1870 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 SLC7A15P-201ENST00000424028 1363 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 TKT-202ENST00000423516 2075 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC087499.6-201ENST00000411576 835 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC023310.3-201ENST00000557027 670 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC100756.1-201ENST00000562736 682 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC138749.3-201ENST00000567691 622 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 LINC01115-203ENST00000606068 577 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC116165.1-201ENST00000611806 668 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 LINC00554-201ENST00000564841 3011 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AL607033.1-201ENST00000623900 1599 ntBASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
COL4A3BPQ9Y5P4 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 METTL26-204ENST00000397665 558 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 TARDBPP1-201ENST00000442013 1203 ntBASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 AC055876.2-201ENST00000531834 546 ntBASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 RBM7-207ENST00000544582 692 ntTSL 3 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 AL358472.5-202ENST00000641448 1267 ntBASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
COL4A3BPQ9Y5P4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms