Protein–RNA interactions for Protein: Q9UPT8

ZC3H4, Zinc finger CCCH domain-containing protein 4, humanhuman

Known RBP Predictions only

Length 1,303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZC3H4Q9UPT8 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 IYD-204ENST00000392255 1180 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 ACTG1P2-201ENST00000415776 1125 ntBASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 ACTG1P11-201ENST00000425411 1125 ntBASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 AL353637.1-201ENST00000451571 732 ntBASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 AC097359.3-201ENST00000603982 1210 ntBASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
ZC3H4Q9UPT8 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 DPM3-202ENST00000368399 517 ntBASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 AC234644.1-201ENST00000406065 370 ntBASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 AL627389.1-201ENST00000413508 1182 ntBASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 RPSAP31-201ENST00000416648 895 ntBASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 AC012618.1-201ENST00000461223 412 ntBASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 FKBP11-212ENST00000552878 1052 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 AC005730.2-201ENST00000564549 1184 ntBASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 PPY2P-201ENST00000582808 702 ntBASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 ENPP7P14-201ENST00000621765 1040 ntBASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 AC022748.3-201ENST00000621828 275 ntBASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 AC008894.3-201ENST00000624324 3103 ntBASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
ZC3H4Q9UPT8 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 CROCCP2-202ENST00000412962 2773 ntBASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 HMGN3-201ENST00000275036 831 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 LAMTOR4-201ENST00000341942 605 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 HMGN3-202ENST00000344726 872 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 KRT8P29-201ENST00000420409 1371 ntBASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
ZC3H4Q9UPT8 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 66.1 ms