Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
UPF3BQ9BZI7 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.8■□□□□ 0.6
UPF3BQ9BZI7 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 SLC25A34-201ENST00000294454 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 AL133215.2-201ENST00000609242 977 ntBASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
UPF3BQ9BZI7 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 GSN-203ENST00000373808 2664 ntTSL 2 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 AC004835.2-201ENST00000603762 682 ntBASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 AC009093.7-201ENST00000623853 1223 ntBASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
UPF3BQ9BZI7 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 AC136604.1-201ENST00000418535 575 ntBASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 CNN2P11-201ENST00000429351 262 ntBASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
UPF3BQ9BZI7 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 63 ms