Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 MYB-201ENST00000316528 3571 ntTSL 5 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 MYB-241ENST00000616088 3573 ntTSL 5 BASIC12.17□□□□□ -0.46
CCDC140Q96MF4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 AC144831.1-201ENST00000573312 2656 ntBASIC12.16□□□□□ -0.46
CCDC140Q96MF4 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 SULT2A1-201ENST00000222002 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 CYMP-203ENST00000474680 1263 ntBASIC12.16□□□□□ -0.46
CCDC140Q96MF4 AC004890.2-204ENST00000481968 304 ntBASIC12.16□□□□□ -0.46
CCDC140Q96MF4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 AC138035.3-201ENST00000622706 2791 ntBASIC12.16□□□□□ -0.46
CCDC140Q96MF4 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 AL109954.1-202ENST00000564051 2148 ntBASIC12.16□□□□□ -0.46
CCDC140Q96MF4 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 LINC00554-201ENST00000564841 3011 ntBASIC12.16□□□□□ -0.46
CCDC140Q96MF4 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC12.16□□□□□ -0.46
CCDC140Q96MF4 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 BANP-201ENST00000286122 2368 ntTSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 AC093214.1-201ENST00000511688 1107 ntBASIC12.15□□□□□ -0.46
CCDC140Q96MF4 TNFRSF10A-AS1-201ENST00000518308 637 ntTSL 3 BASIC12.15□□□□□ -0.46
CCDC140Q96MF4 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.15□□□□□ -0.46
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms