Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
ATG4AQ8WYN0 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 FURIN-207ENST00000618099 4345 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 MIR574-201ENST00000385209 96 ntBASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 AC004832.2-201ENST00000426397 482 ntBASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 AL645939.2-201ENST00000427340 991 ntBASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 PAM-206ENST00000438793 5432 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 BANF1P1-201ENST00000553684 263 ntBASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
ATG4AQ8WYN0 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 CD81-202ENST00000381036 880 ntTSL 3 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 PMP22-202ENST00000395936 816 ntTSL 3 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 ACTG1P14-201ENST00000446382 1122 ntBASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 KRT18P58-201ENST00000527480 1120 ntBASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
ATG4AQ8WYN0 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms