Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 AC020658.6-201ENST00000623564 1870 ntBASIC18.48■□□□□ 0.55
NKX2-3Q8TAU0 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 S100A16-201ENST00000368703 946 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 RNA5SP412-201ENST00000516234 123 ntBASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 TIMM17BP1-201ENST00000545713 516 ntBASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.47■□□□□ 0.55
NKX2-3Q8TAU0 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 SLC9A7P1-201ENST00000554295 3311 ntBASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 LOX-206ENST00000639739 1626 ntTSL 5 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 KLF2P4-201ENST00000451959 1225 ntBASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 RN7SL399P-201ENST00000471648 279 ntBASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 AC073347.1-201ENST00000421633 2643 ntBASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 LINC00554-201ENST00000564841 3011 ntBASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 AC112693.3-201ENST00000624819 1983 ntBASIC18.46■□□□□ 0.55
NKX2-3Q8TAU0 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms