Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.58□□□□□ -0.08
NUP54Q7Z3B4 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 NME4-207ENST00000450036 985 ntTSL 3 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 AC135586.1-201ENST00000539323 574 ntBASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 AC097359.3-201ENST00000603982 1210 ntBASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 AC008738.7-201ENST00000609744 511 ntBASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
NUP54Q7Z3B4 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 FAM8A3P-201ENST00000427218 844 ntBASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 TIMM17BP1-201ENST00000545713 516 ntBASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 AC092364.2-202ENST00000597012 1073 ntBASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 AC009118.2-201ENST00000613275 655 ntBASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 OR2I1P-209ENST00000641730 5365 ntBASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
NUP54Q7Z3B4 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.56□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms