Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSR1P43307 AP000842.3-202ENST00000569238 1080 ntBASIC16.83■□□□□ 0.28
SSR1P43307 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.83■□□□□ 0.28
SSR1P43307 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.83■□□□□ 0.28
SSR1P43307 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC16.83■□□□□ 0.28
SSR1P43307 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSR1P43307 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.83■□□□□ 0.28
SSR1P43307 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
SSR1P43307 CHRNA7-201ENST00000306901 6181 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSR1P43307 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.83■□□□□ 0.28
SSR1P43307 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
SSR1P43307 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
SSR1P43307 AC018892.3-201ENST00000623986 2499 ntBASIC16.82■□□□□ 0.28
SSR1P43307 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 AC136621.1-201ENST00000624017 2304 ntBASIC16.82■□□□□ 0.28
SSR1P43307 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.82■□□□□ 0.28
SSR1P43307 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
SSR1P43307 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC16.82■□□□□ 0.28
SSR1P43307 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.82■□□□□ 0.28
SSR1P43307 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.82■□□□□ 0.28
SSR1P43307 TRAF1-201ENST00000373887 6324 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.82■□□□□ 0.28
SSR1P43307 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 C11orf88-201ENST00000332814 795 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
SSR1P43307 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.82■□□□□ 0.28
SSR1P43307 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC16.82■□□□□ 0.28
SSR1P43307 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
SSR1P43307 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.82■□□□□ 0.28
SSR1P43307 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC16.82■□□□□ 0.28
SSR1P43307 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC16.82■□□□□ 0.28
SSR1P43307 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.82■□□□□ 0.28
SSR1P43307 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 PTPRU-204ENST00000428026 5550 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
SSR1P43307 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.82■□□□□ 0.28
SSR1P43307 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
SSR1P43307 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.82■□□□□ 0.28
SSR1P43307 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
SSR1P43307 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 CIC-207ENST00000575354 5473 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.81■□□□□ 0.28
SSR1P43307 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SSR1P43307 AL691432.1-201ENST00000596308 1422 ntBASIC16.81■□□□□ 0.28
SSR1P43307 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.81■□□□□ 0.28
SSR1P43307 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SSR1P43307 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
SSR1P43307 ADH5P3-201ENST00000433842 1137 ntBASIC16.81■□□□□ 0.28
SSR1P43307 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC16.81■□□□□ 0.28
SSR1P43307 ACTG1P14-201ENST00000446382 1122 ntBASIC16.81■□□□□ 0.28
SSR1P43307 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.81■□□□□ 0.28
SSR1P43307 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
SSR1P43307 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC16.81■□□□□ 0.28
SSR1P43307 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC16.81■□□□□ 0.28
SSR1P43307 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC16.81■□□□□ 0.28
SSR1P43307 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.81■□□□□ 0.28
SSR1P43307 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.81■□□□□ 0.28
SSR1P43307 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.81■□□□□ 0.28
SSR1P43307 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.81■□□□□ 0.28
SSR1P43307 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.81■□□□□ 0.28
SSR1P43307 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC16.81■□□□□ 0.28
SSR1P43307 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 IL17RA-201ENST00000319363 8607 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 CACNA2D3-202ENST00000415676 3661 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
SSR1P43307 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.81■□□□□ 0.28
SSR1P43307 ITGB2-208ENST00000397857 2813 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
SSR1P43307 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.81■□□□□ 0.28
SSR1P43307 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 BNIP3P1-202ENST00000550043 1585 ntBASIC16.81■□□□□ 0.28
SSR1P43307 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
SSR1P43307 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.8■□□□□ 0.28
SSR1P43307 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
SSR1P43307 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSR1P43307 KDM5B-202ENST00000367264 6449 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
SSR1P43307 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC16.8■□□□□ 0.28
SSR1P43307 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
SSR1P43307 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
SSR1P43307 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 59.1 ms