Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 HIST2H2BC-201ENST00000498492 580 ntBASIC17.5■□□□□ 0.39
COL11A1P12107 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC17.5■□□□□ 0.39
COL11A1P12107 AL451050.2-201ENST00000606967 682 ntBASIC17.5■□□□□ 0.39
COL11A1P12107 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC17.5■□□□□ 0.39
COL11A1P12107 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 AC084018.2-201ENST00000613093 2607 ntBASIC17.5■□□□□ 0.39
COL11A1P12107 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
COL11A1P12107 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.5■□□□□ 0.39
COL11A1P12107 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.5■□□□□ 0.39
COL11A1P12107 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.5■□□□□ 0.39
COL11A1P12107 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL11A1P12107 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
COL11A1P12107 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 TPM2-202ENST00000360958 1189 ntAPPRIS P5 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
COL11A1P12107 KRTAP10-13P-201ENST00000412914 571 ntBASIC17.49■□□□□ 0.39
COL11A1P12107 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC17.49■□□□□ 0.39
COL11A1P12107 TMEM208-207ENST00000563953 887 ntTSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC17.49■□□□□ 0.39
COL11A1P12107 OR10B1P-201ENST00000601666 907 ntBASIC17.49■□□□□ 0.39
COL11A1P12107 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC17.49■□□□□ 0.39
COL11A1P12107 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
COL11A1P12107 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
COL11A1P12107 KLK8-204ENST00000391806 1051 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 AL136309.1-201ENST00000403917 691 ntBASIC17.49■□□□□ 0.39
COL11A1P12107 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC17.49■□□□□ 0.39
COL11A1P12107 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.49■□□□□ 0.39
COL11A1P12107 NAT9-222ENST00000583476 583 ntTSL 3 BASIC17.49■□□□□ 0.39
COL11A1P12107 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL11A1P12107 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
COL11A1P12107 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC17.48■□□□□ 0.39
COL11A1P12107 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.48■□□□□ 0.39
COL11A1P12107 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 SLC9A7P1-202ENST00000556476 2239 ntBASIC17.48■□□□□ 0.39
COL11A1P12107 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.48■□□□□ 0.39
COL11A1P12107 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC17.48■□□□□ 0.39
COL11A1P12107 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
COL11A1P12107 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL11A1P12107 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC17.48■□□□□ 0.39
COL11A1P12107 NDUFAB1P1-201ENST00000404262 460 ntBASIC17.48■□□□□ 0.39
COL11A1P12107 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC17.48■□□□□ 0.39
COL11A1P12107 COX5BP1-201ENST00000507622 393 ntBASIC17.48■□□□□ 0.39
COL11A1P12107 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
COL11A1P12107 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC17.48■□□□□ 0.39
COL11A1P12107 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC17.48■□□□□ 0.39
COL11A1P12107 AP001002.3-201ENST00000623482 206 ntBASIC17.48■□□□□ 0.39
COL11A1P12107 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 LTB4R2-202ENST00000528054 3092 ntBASIC17.48■□□□□ 0.39
COL11A1P12107 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
COL11A1P12107 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL11A1P12107 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.48■□□□□ 0.39
COL11A1P12107 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL11A1P12107 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.48■□□□□ 0.39
COL11A1P12107 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL11A1P12107 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.47■□□□□ 0.39
COL11A1P12107 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL11A1P12107 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC17.47■□□□□ 0.39
COL11A1P12107 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL11A1P12107 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
COL11A1P12107 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.47■□□□□ 0.39
COL11A1P12107 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL11A1P12107 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL11A1P12107 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms