Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC13.89□□□□□ -0.19
LMX1BO60663 RAB34-224ENST00000636513 888 ntTSL 5 BASIC13.89□□□□□ -0.19
LMX1BO60663 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC13.89□□□□□ -0.19
LMX1BO60663 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC13.89□□□□□ -0.19
LMX1BO60663 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC13.89□□□□□ -0.19
LMX1BO60663 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC13.89□□□□□ -0.19
LMX1BO60663 AL136379.1-201ENST00000623471 2642 ntBASIC13.89□□□□□ -0.19
LMX1BO60663 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 C18orf15-201ENST00000623680 2534 ntBASIC13.89□□□□□ -0.19
LMX1BO60663 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
LMX1BO60663 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC13.88□□□□□ -0.19
LMX1BO60663 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC13.88□□□□□ -0.19
LMX1BO60663 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC13.88□□□□□ -0.19
LMX1BO60663 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC13.88□□□□□ -0.19
LMX1BO60663 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 UGT1A2P-201ENST00000454886 866 ntBASIC13.88□□□□□ -0.19
LMX1BO60663 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.88□□□□□ -0.19
LMX1BO60663 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC13.88□□□□□ -0.19
LMX1BO60663 INO80E-210ENST00000567705 880 ntTSL 3 BASIC13.88□□□□□ -0.19
LMX1BO60663 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 AC027307.3-201ENST00000594262 1100 ntBASIC13.88□□□□□ -0.19
LMX1BO60663 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC13.88□□□□□ -0.19
LMX1BO60663 SPTSSB-204ENST00000617024 1292 ntBASIC13.88□□□□□ -0.19
LMX1BO60663 MIR6080-201ENST00000617359 66 ntBASIC13.88□□□□□ -0.19
LMX1BO60663 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.88□□□□□ -0.19
LMX1BO60663 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LMX1BO60663 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC13.88□□□□□ -0.19
LMX1BO60663 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC13.88□□□□□ -0.19
LMX1BO60663 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
LMX1BO60663 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
LMX1BO60663 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
LMX1BO60663 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC13.87□□□□□ -0.19
LMX1BO60663 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC13.87□□□□□ -0.19
LMX1BO60663 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
LMX1BO60663 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC13.87□□□□□ -0.19
LMX1BO60663 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
LMX1BO60663 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC13.87□□□□□ -0.19
LMX1BO60663 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
LMX1BO60663 NORAD-201ENST00000565493 5339 ntBASIC13.87□□□□□ -0.19
LMX1BO60663 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
LMX1BO60663 GSAP-205ENST00000430584 600 ntTSL 5 BASIC13.87□□□□□ -0.19
LMX1BO60663 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC13.87□□□□□ -0.19
LMX1BO60663 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC13.87□□□□□ -0.19
LMX1BO60663 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.87□□□□□ -0.19
LMX1BO60663 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC13.87□□□□□ -0.19
LMX1BO60663 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC13.87□□□□□ -0.19
LMX1BO60663 LINC01225-203ENST00000563550 1244 ntBASIC13.87□□□□□ -0.19
LMX1BO60663 MIR4313-201ENST00000580760 101 ntBASIC13.87□□□□□ -0.19
LMX1BO60663 AC073389.1-201ENST00000595595 795 ntBASIC13.87□□□□□ -0.19
LMX1BO60663 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
LMX1BO60663 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.87□□□□□ -0.19
LMX1BO60663 AL691432.1-201ENST00000596308 1422 ntBASIC13.87□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms