Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC188H7C350 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC188H7C350 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC188H7C350 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 AC140479.7-201ENST00000636301 2332 ntBASIC16.38■□□□□ 0.21
CCDC188H7C350 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 FAM220BP-201ENST00000377689 816 ntBASIC16.38■□□□□ 0.21
CCDC188H7C350 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 AC079776.4-201ENST00000511039 504 ntBASIC16.38■□□□□ 0.21
CCDC188H7C350 RARRES2P8-201ENST00000566335 367 ntBASIC16.38■□□□□ 0.21
CCDC188H7C350 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.38■□□□□ 0.21
CCDC188H7C350 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC188H7C350 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC188H7C350 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.38■□□□□ 0.21
CCDC188H7C350 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CCDC188H7C350 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CCDC188H7C350 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC188H7C350 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC16.37■□□□□ 0.21
CCDC188H7C350 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CCDC188H7C350 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC188H7C350 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.37■□□□□ 0.21
CCDC188H7C350 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CCDC188H7C350 TNFSF13-201ENST00000338784 1971 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 CICP14-201ENST00000629111 2732 ntBASIC16.37■□□□□ 0.21
CCDC188H7C350 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
CCDC188H7C350 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.37■□□□□ 0.21
CCDC188H7C350 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC188H7C350 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC188H7C350 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
CCDC188H7C350 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC188H7C350 RNA5SP410-201ENST00000516285 106 ntBASIC16.37■□□□□ 0.21
CCDC188H7C350 IGHV3-22-201ENST00000520721 359 ntBASIC16.37■□□□□ 0.21
CCDC188H7C350 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.37■□□□□ 0.21
CCDC188H7C350 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC188H7C350 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC16.37■□□□□ 0.21
CCDC188H7C350 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC188H7C350 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.37■□□□□ 0.21
CCDC188H7C350 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC16.37■□□□□ 0.21
CCDC188H7C350 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC188H7C350 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC188H7C350 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC16.37■□□□□ 0.21
CCDC188H7C350 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
CCDC188H7C350 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CCDC188H7C350 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.37■□□□□ 0.21
CCDC188H7C350 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC188H7C350 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
CCDC188H7C350 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
CCDC188H7C350 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC188H7C350 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
CCDC188H7C350 TMEM150B-201ENST00000326652 943 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
CCDC188H7C350 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.36■□□□□ 0.21
CCDC188H7C350 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
CCDC188H7C350 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC16.36■□□□□ 0.21
CCDC188H7C350 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.36■□□□□ 0.21
CCDC188H7C350 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC16.36■□□□□ 0.21
CCDC188H7C350 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 111 ms